View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_13 (Length: 338)
Name: NF16065_low_13
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 29120723 - 29121037
Alignment:
| Q |
19 |
acatgtacgtgtacgtcgtgttttaaaaattggaccgaacttttcagttcaatcagtcaaaccaaaaatgtagtttgcttcaactctatttaaaacgtat |
118 |
Q |
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| T |
29120723 |
acatgtacgtgtacgtcgtgttttaaaaattggaccgaacttttcagttcaatcagtcaaaccaaaaatgtagtttgcttcaactctatttaaaacgtat |
29120822 |
T |
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| Q |
119 |
tagtagtc---tagtcgaatctgattgaaccaaatttaaccacggttagttcaacatannnnnnnn-ccttgtatttatttattagtgatctagttcgac |
214 |
Q |
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| T |
29120823 |
tggtagtcgtctagtcgaatctgattgaaccaaatttaaccacggttagttcaacatatttttttttccttgtatttatttattagtgatctagttcgac |
29120922 |
T |
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| Q |
215 |
cgtgattgaaccataactcagaagtcactctagtttgatcaccaatttccaaaacatttttgtgtgagaaatattaaaaatgatgttagtattgtattta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29120923 |
cgtgattgaaccataactcagaagtcactctagtttgatcaccaatttccaaaacatttgtgtgtgagaaatattaaaaatgatgttagtattgtattta |
29121022 |
T |
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| Q |
315 |
cttctccttgatgat |
329 |
Q |
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| T |
29121023 |
cttctccttgatgat |
29121037 |
T |
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