View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_14 (Length: 337)
Name: NF16065_low_14
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 140 - 321
Target Start/End: Original strand, 410600 - 410781
Alignment:
| Q |
140 |
atttgaaattaatgatttatctgttaaccattcaaatgacatttctattttgtttgaacttggagcaggcagctcttgatgtgttcactgaggagcctcc |
239 |
Q |
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| T |
410600 |
atttgaaattaattagttatctgttaaccattcaaatgacatttctattttgtttgaacttggagcaggcagctcttgatgtgttcactgaggagcctcc |
410699 |
T |
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| Q |
240 |
agccaaagacagtaagttagtgcaacatgagaatgtgattgccactcctcatcttggagccagcaccaaagaagcacaggtt |
321 |
Q |
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| T |
410700 |
agccaaagacagtaagttagtgcaacatgagaatgtgattgctactcctcatcttggagccagcaccaaagaagcacaggtt |
410781 |
T |
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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 410432 - 410530
Alignment:
| Q |
18 |
gaagaagggtgtgagaatcatcaatgttgctagaggtggtgttattgatgaagatgctttagtcaaagctcttgatagtggaattgttgctcaggtcaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
410432 |
gaagaatggtgtgagaatcatcaatgttgctagaggtggtgttattgatgaagatgctttagtcaaagctcttgatagtggaattgttgctcaggtcaa |
410530 |
T |
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