View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16065_low_16 (Length: 324)
Name: NF16065_low_16
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 24655555 - 24655844
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24655555 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacggc |
24655654 |
T |
|
| Q |
118 |
aaattcgcttggtttgatttaaatacccaaacaataattgaggagtttggtgttataacacagatgcttggatgtatgataacaattcataaggaaaacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24655655 |
aaattcgcttggtttgatttaaatacccaaacaataattgaggagtttggtgttataacacagatgcttggatgtcagataacaattcataaggaaaacc |
24655754 |
T |
|
| Q |
218 |
ttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgctaagatgtgtttct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24655755 |
ttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgctaagatgtgtttct |
24655844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 29416826 - 29416542
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
29416826 |
atcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggc |
29416727 |
T |
|
| Q |
118 |
aaattcgcttggtttgatttaaatacccaaacaataattgaggagtttggtgttataacacagatgcttggatgtatgataacaattcataaggaaaacc |
217 |
Q |
| |
|
|||| |||||| |||||||||||||||| |||||||||||| | |||||||||||| ||| | | |||| |||| |||||||||| ||||||| |
|
|
| T |
29416726 |
gaattagcttggattgatttaaataccca---aataattgaggactcgggtgttataacagagaggagtctttgtaagatagcaattcataaagaaaacc |
29416630 |
T |
|
| Q |
218 |
ttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgctaagatgtgtttct |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29416629 |
ttcttccttttggaggaaaaagtatttaataggc--ttttttctgggtttcactttggatcttgagcatcttgtgctaggatgtgtttct |
29416542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 16486783 - 16486686
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacg |
115 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
16486783 |
atcatggattaagatcttcattttagggcccttaccttatcttgagtatcctattggagccggaaagaagggtgatatgttgttcagaaaaaaagacg |
16486686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 28019191 - 28019290
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacggc |
117 |
Q |
| |
|
|||||||||||| ||||| ||||||| || || |||||||||||| |||| |||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
28019191 |
atcatggactaaaatcttcgttgtaggaccattaccttgccttgagcatccaatcggagcgggaaagaagggtgatatgttgttcaaaaagaaagacggc |
28019290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 42840539 - 42840462
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatat |
95 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||||||||||| || ||||| || ||||||||| |||| |
|
|
| T |
42840539 |
atcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagcagggaagaagggcaatat |
42840462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 42800809 - 42800729
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgtt |
98 |
Q |
| |
|
|||||||||||| ||||| | |||||||| || ||||||||||| |||||| ||||||| ||||||||||| ||| |||| |
|
|
| T |
42800809 |
atcatggactaaaatcttcaccgtagggcctttaccttgccttgactatcctgtcggagcgggaaagaagggtgatctgtt |
42800729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 42777828 - 42777877
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatc |
67 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
42777828 |
atcatggactaagatcttcattgtagggcccttaccttgtctcgagtatc |
42777877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 39724597 - 39724525
Alignment:
| Q |
18 |
atcatggactaagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggc |
90 |
Q |
| |
|
|||||||||||| |||| ||||| || || || ||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
39724597 |
atcatggactaaactcttcattgttggacctttaccttgccttgattatccaatcggagcgggtaagaagggc |
39724525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 6118120 - 6118161
Alignment:
| Q |
206 |
ataaggaaaaccttcttccttttgaaggaaaaagtatttaat |
247 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
6118120 |
ataaggaaaaccttctttcttttgaaggaattagtatttaat |
6118161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University