View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_17 (Length: 309)
Name: NF16065_low_17
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 22661032 - 22660750
Alignment:
| Q |
17 |
attatcatgtgatttttatgtgtgaaatcaattctttgtcaaagctagctagatgactttcaaaaaagcaaaatggaggatattctcttctcggtcaaga |
116 |
Q |
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| T |
22661032 |
attatcatgtgatttttatgtgtgaaatcaattctttgtcaaagctagctagatgactttcaaaaaagcaaaatggaggatattctcttctcggtcaaga |
22660933 |
T |
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| Q |
117 |
a-ctatgtccacatataaatacaattatgaaattagtcctaaattattttcaaaccatccaaaatccaatccttgaaaaattgtataagtttgaagtgaa |
215 |
Q |
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| T |
22660932 |
atctatgtccacatataaatacaattatgaaattagtcctaaattattttcaaaccatccaaaatccaatccttcaaaaattgtataagtttgaagtgaa |
22660833 |
T |
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| Q |
216 |
gtccttgatttacatcacattacaacaattttttcaccgttaattaaagaatgattttacannnnnnngaagtatttgttctt |
298 |
Q |
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| T |
22660832 |
gtccttggattacatcacattacaacaattttttcaccgttaattaaaggatgattttacatttttttgaagtatttgttctt |
22660750 |
T |
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