View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_18 (Length: 303)
Name: NF16065_low_18
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 5892999 - 5893267
Alignment:
| Q |
18 |
acttacgtcgtataagctcgattgaaatactctccactcatcgtctcaactccttttccgaaatccgaaaagacgagaacatgagattgattcaaaagct |
117 |
Q |
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| T |
5892999 |
acttacgtcgtataagctcgattgaaatactctccactcatcgtctcaactccttttccgaaatccgaaaagacgagaatatgagattgattcaaaagct |
5893098 |
T |
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| Q |
118 |
tagtgagaattctcacaaagatttcacaaaagttgagcttagacccttgtttgctgagctaacatttaacataatcatgagaatggtttgtggaaaacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893099 |
tagtgagaattctcacaaagatttcacaaaagttgagcttagacccttgtttgctgagctaacatttaacataatcatgagaatggtttgtggaaaacgt |
5893198 |
T |
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| Q |
218 |
ttttatgggaatgaatctcatgatgcaaaattttttagagatgtcatgaatgaggtgcaacagtttggg |
286 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5893199 |
ttttatgggaatgaatctcatgatgcaaaaaattttagagatgtcatgaatgaggtgcaacagtttggg |
5893267 |
T |
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