View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_2 (Length: 481)
Name: NF16065_low_2
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 7554122 - 7553639
Alignment:
| Q |
1 |
attctctgtagtgtttcttttatgttgttggatggtgcaattacataatgatattcgtttttggacaaaactttaacctatatactttttgttgctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554122 |
attctctgtagtgtttcttttatgttgttggatggtgcaattacataatgatattcgtttttggacaaaactttaacctatatactttttgttgctgcaa |
7554023 |
T |
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| Q |
101 |
ctaagagtttatttatccattttactatctgcaagagagttttctgtttttggtagtgtgcatgtgatttgaaatcccaaattgtattagctaattgaat |
200 |
Q |
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| T |
7554022 |
ctaggagtttatttatccattttattatctgcaagagagttttctgtttttggtagtgtgcatgtgatttgaaatcccaaattgtattagctaattgaat |
7553923 |
T |
|
| Q |
201 |
tgaccactagattttgtagatatttttgaggataaatatcat---atagtgagtaattaattttgtttttgacaagtagtgagtaattaattattcacgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7553922 |
tgaccactagattttgtagatatttttgaggataaatatcatataatagtgagtaattaattttgtttttgacaagtagtgagtaattaattattcacgt |
7553823 |
T |
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| Q |
298 |
nnnnnnnnnnnnnnnnnntttaaaccacttactttggataatatcaatttagacttctcatttttactaccttgcatcaacttataattctccacagctt |
397 |
Q |
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| T |
7553822 |
aaaaaatcaaaatcaaaatttaaaccacttactttggataatatcaatttagacttctcatttttactaccttgcatcaacttataattctccacagctt |
7553723 |
T |
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| Q |
398 |
tacgatnnnnnnntaattattttaggaaaagtaagttctacattttagcagccctcatatgataatactcaagaaattagcacc |
481 |
Q |
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| T |
7553722 |
tacgataaaaaaataattattttaggaaaagtaagttctacattttagcagccctcatatgataatactcaagaaattagcacc |
7553639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 8047572 - 8047618
Alignment:
| Q |
105 |
gagtttatttatccattttactatctgcaagagagttttctgttttt |
151 |
Q |
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| T |
8047572 |
gagtttatttatccattttattatatgcaagagagttttctgttttt |
8047618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 48250023 - 48250053
Alignment:
| Q |
151 |
tggtagtgtgcatgtgatttgaaatcccaaa |
181 |
Q |
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| T |
48250023 |
tggtagtgtgcatgtgatttgaaatcccaaa |
48250053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 45056004 - 45056046
Alignment:
| Q |
2 |
ttctctgtagtgtttcttttatgttgttggatggtgcaattac |
44 |
Q |
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| T |
45056004 |
ttctctctagggtttcttttatgttgttggatggtgcaattac |
45056046 |
T |
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