View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16065_low_20 (Length: 284)

Name: NF16065_low_20
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16065_low_20
NF16065_low_20
[»] chr8 (8 HSPs)
chr8 (31-284)||(4962258-4962515)
chr8 (173-284)||(12195535-12195646)
chr8 (173-284)||(12439963-12440074)
chr8 (173-284)||(12200553-12200664)
chr8 (173-284)||(12444981-12445092)
chr8 (179-284)||(15349100-15349205)
chr8 (26-98)||(12195382-12195454)
chr8 (26-98)||(12439810-12439882)
[»] chr3 (3 HSPs)
chr3 (161-284)||(11015224-11015347)
chr3 (161-284)||(11005661-11005784)
chr3 (160-284)||(11024236-11024360)
[»] chr4 (9 HSPs)
chr4 (162-210)||(49044002-49044050)
chr4 (193-284)||(43596164-43596255)
chr4 (173-243)||(7765850-7765920)
chr4 (176-230)||(7773621-7773675)
chr4 (173-243)||(7786672-7786742)
chr4 (189-284)||(7877970-7878068)
chr4 (160-230)||(48147506-48147576)
chr4 (129-207)||(48705198-48705276)
chr4 (19-72)||(48898785-48898838)
[»] chr6 (1 HSPs)
chr6 (177-230)||(21979424-21979477)
[»] chr7 (1 HSPs)
chr7 (19-83)||(48883879-48883943)
[»] chr5 (1 HSPs)
chr5 (156-210)||(29696427-29696481)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 284
Target Start/End: Complemental strand, 4962515 - 4962258
Alignment:
Q  31 gaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgctgctcctattgtcaaagtaaggtcattcttta 130  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  4962515 gaacttttctcattgagagataatgcttggaatcaaattgaggatcctcactttatttatttcaatgctgctcctattgtcaaagtagggttattcttta 4962416  T
Q  131 atggggcctttcattgggttgctcgtcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 230  Q
    | | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4962415 acgaggcctttcattgggttgctcgtcgtaatgatttatcagtggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcc 4962316  T
Q  231 ccatgattttgactatgatc----ctgtaaattatggtttgtgggtatttggagaatt 284  Q
    | |||||||||||||||| |    |||||| |||||||||||||||||||||||||||    
T  4962315 caatgattttgactatgaacctgtctgtaagttatggtttgtgggtatttggagaatt 4962258  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 12195535 - 12195646
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 272  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||| ||| ||| |   ||||||||||||||||    
T  12195535 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggt 12195634  T
Q  273 atttggagaatt 284  Q
    ||||||| ||||    
T  12195635 atttggaaaatt 12195646  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 12439963 - 12440074
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 272  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||| ||| ||| |   ||||||||||||||||    
T  12439963 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggt 12440062  T
Q  273 atttggagaatt 284  Q
    ||||||| ||||    
T  12440063 atttggaaaatt 12440074  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 12200553 - 12200664
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 272  Q
    |||| |||||||||| |||||||||||| |||||||||||| ||||||| | ||||||  |||||||  || ||| || | |  ||||||||||||||||    
T  12200553 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12200652  T
Q  273 atttggagaatt 284  Q
    ||||||||||||    
T  12200653 atttggagaatt 12200664  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 12444981 - 12445092
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 272  Q
    |||| |||||||||| |||||||||||| |||||||||||| ||||||| | ||||||  |||||||  || ||| || | |  ||||||||||||||||    
T  12444981 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12445080  T
Q  273 atttggagaatt 284  Q
    ||||||||||||    
T  12445081 atttggagaatt 12445092  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 15349100 - 15349205
Alignment:
Q  179 ttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggtatttgg 278  Q
    |||||||||  ||||||||||  ||||||||| |||| |||||||||| |||  ||||||||||  ||||| |||   ||| |||||||||||| |||||    
T  15349100 ttattgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttgg 15349199  T
Q  279 agaatt 284  Q
     |||||    
T  15349200 cgaatt 15349205  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 12195382 - 12195454
Alignment:
Q  26 atttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgc 98  Q
    |||| ||| ||||||||||||||||||||  ||||||| ||||||| | ||||||| | |||||||| |||||    
T  12195382 atttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttgaatgc 12195454  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 12439810 - 12439882
Alignment:
Q  26 atttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgc 98  Q
    |||| ||| ||||||||||||||||||||  ||||||| ||||||| | ||||||| | |||||||| |||||    
T  12439810 atttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttgaatgc 12439882  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 11015347 - 11015224
Alignment:
Q  161 atgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatta 260  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||||| | || ||||||| | ||||  ||| |||||||||||| ||| || |||     
T  11015347 atgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattg 11015248  T
Q  261 tggtttgtgggtatttggagaatt 284  Q
    || ||||||| |||||||||||||    
T  11015247 tgatttgtggatatttggagaatt 11015224  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 11005784 - 11005661
Alignment:
Q  161 atgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatta 260  Q
    ||||||| ||||||||||||||||||| |||||||||| | ||||||||| | |||||||||||| ||||  ||| ||||||  |||| ||| || |||     
T  11005784 atgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctatagattg 11005685  T
Q  261 tggtttgtgggtatttggagaatt 284  Q
    || ||||||| |||||||||||||    
T  11005684 tgatttgtggatatttggagaatt 11005661  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 11024360 - 11024236
Alignment:
Q  160 aatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatt 259  Q
    |||||||||||||||||||||||| ||| |||||||||| | |||||| || | || ||||||||| ||||  ||| ||||||  |||| ||| |  |||    
T  11024360 aatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggatt 11024261  T
Q  260 atggtttgtgggtatttggagaatt 284  Q
     || ||||||| |||||||||||||    
T  11024260 gtgatttgtggatatttggagaatt 11024236  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 49044050 - 49044002
Alignment:
Q  162 tgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaa 210  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  49044050 tgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaa 49044002  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 43596255 - 43596164
Alignment:
Q  193 gatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggtatttggagaatt 284  Q
    |||||||| ||||| ||| | |||||||||| | ||||| ||| ||||||||||||||||  ||||| || | ||||||||||||| |||||    
T  43596255 gatttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatt 43596164  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 7765850 - 7765920
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgac 243  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||| ||||||||||||||  ||||| |||||    
T  7765850 tggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgac 7765920  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 7773675 - 7773621
Alignment:
Q  176 atgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 230  Q
    |||| ||||||  |||||||||||| |||||||||||||| ||||||||||||||    
T  7773675 atgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttcc 7773621  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 7786672 - 7786742
Alignment:
Q  173 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgac 243  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||| ||||||||||||||  ||||| |||||    
T  7786672 tggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgac 7786742  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 7877970 - 7878068
Alignment:
Q  189 ctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactat-gatcct--gtaaattatggtttgtgggtatttggagaatt 284  Q
    |||||||||||| |||| ||||||||| ||||||||||||||  || || ||||| || || | |  ||| ||| ||||||||||||||||||||||||    
T  7877970 ctttgatttaatggaaaagaaattgtttgagatgcctcttccaaataatgttgaccatagagcattagtacattctggtttgtgggtatttggagaatt 7878068  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 48147576 - 48147506
Alignment:
Q  160 aatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 230  Q
    ||||||||| ||| |||||||||| |||  ||||||||||| ||||||| | | |||||||||||| ||||    
T  48147576 aatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagagatgccttttcc 48147506  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 48705276 - 48705198
Alignment:
Q  129 taatggggcctttcattgggttgctcgtcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaagg 207  Q
    |||||||||  |||||||| | |||  |||| ||||||||  || |||||||||||||| |||||||||||| ||||||    
T  48705276 taatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagg 48705198  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 48898785 - 48898838
Alignment:
Q  19 ttatcacatttggaacttttctcattgagagataatgcgtggaatcaaattgag 72  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||  ||||||||    
T  48898785 ttatcacacttggagtttttctcattgagagataatgtgtggaaggaaattgag 48898838  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 21979477 - 21979424
Alignment:
Q  177 tgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 230  Q
    ||||||||||| |||||||||||||||||||||| | || ||||| ||||||||    
T  21979477 tgttattgttgcctttgatttaatagaaaggaaactttttgagatccctcttcc 21979424  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 48883879 - 48883943
Alignment:
Q  19 ttatcacatttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactt 83  Q
    ||||||||||||||   |||||||||||||||||||  ||||||  ||||||||||| |||||||    
T  48883879 ttatcacatttggagtgtttctcattgagagataatatgtggaaagaaattgaggatgctcactt 48883943  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 29696427 - 29696481
Alignment:
Q  156 tcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaa 210  Q
    |||||||||| ||||||||  ||||||||||| |||| ||||||| |||||||||    
T  29696427 tcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaa 29696481  T

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