View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_21 (Length: 274)
Name: NF16065_low_21
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 38441067 - 38441264
Alignment:
| Q |
76 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttcatcattttataaaagtagaac---------------caatgatatctggtttgatttg |
160 |
Q |
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| T |
38441067 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttcatcattttttaaaagtagaaccaaactaaactgaaccaatgatatctggtttgatttg |
38441166 |
T |
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| Q |
161 |
gttcggttgattgattcacatgatgcaataaaaaatgtaattttcataactagaaagtagaaactctcattttcaatttattgaacactctgtttagt |
258 |
Q |
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| T |
38441167 |
gttcggttgattgattcacatgatgcaataaaaaatgtaattttcataactagaaaatagaaactctcattttcaatttattgaacactttctttagt |
38441264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 38449543 - 38449660
Alignment:
| Q |
136 |
aaccaatgatatctggtttgatttggttcggttgattgattcacatgatgcaataaaa--aatgtaattttcataactagaaagtagaaactctcatttt |
233 |
Q |
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| T |
38449543 |
aaccaatgatatatggtttgatttggtctgattggttgattcacatgatgcaataaaaaaaatgtaattttcatagttagaaagtagaaactctcatttt |
38449642 |
T |
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| Q |
234 |
caatttattgaacactct |
251 |
Q |
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||||| ||| |||||||| |
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| T |
38449643 |
caattcattcaacactct |
38449660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 38440923 - 38440978
Alignment:
| Q |
12 |
aagaaagtggggtagaaaataatgaatttgacaaaggaggataaagggtcgccaaa |
67 |
Q |
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| T |
38440923 |
aagaaagtggggtagaaaataaagaatttgacaaaggaggataaagggtcgccaaa |
38440978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 26031439 - 26031392
Alignment:
| Q |
191 |
aaaaatgtaattttcataactagaaagtagaaactctcattttcaatt |
238 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
26031439 |
aaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaatt |
26031392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 38449468 - 38449509
Alignment:
| Q |
76 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttc |
117 |
Q |
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||||||||||||||| ||||||||| || ||||||||||||| |
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| T |
38449468 |
aaaccgacaaaatctccatcagttcagtctgcttttgttttc |
38449509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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