View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_3 (Length: 471)
Name: NF16065_low_3
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Original strand, 16659468 - 16659918
Alignment:
| Q |
7 |
gagggttggtattttctggttattggtgcaagcatgattgtttgtgttagggtttcagcgttttctcggaggaaatggttttgcataattgttgtgaaaa |
106 |
Q |
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| T |
16659468 |
gagggttggtattttctggttattggtgcaagcatgattgtttgtgttagggttttagcgttttctcggaggaaatggttttgcataattgttgtgaaaa |
16659567 |
T |
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| Q |
107 |
ggatttgagtggaaaaatagattactgagaaatataaatgttaaattttgaaaatgactcccaagaggaattcactgtttttccaaatacatttcactaa |
206 |
Q |
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| T |
16659568 |
ggatttgagtggaaaaatagattactgagaaatataaatgttaaattttgaaaatgactcccaagaggaattcactgtttttccaaatacatttcactaa |
16659667 |
T |
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| Q |
207 |
actatagtactaattgagtggcaaggaactttttcattgttaggaaggactttatttcattgatttggacctatgcaaattttagcaaattgagactatc |
306 |
Q |
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| T |
16659668 |
actatagtactaattgagtggcaaggaactttttcattgttaggaaggactttatttcattgatttggacctatgcaaattttagcaaattgagactatc |
16659767 |
T |
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| Q |
307 |
cctagnnnnnnnnnnnaaatatgattccaaatcttattttatctttttaggcaatttggttccaaagttagctccaaagctatatacataacaggttgtt |
406 |
Q |
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| T |
16659768 |
cctag-ttttttttttaaatatgattccaaatcttattttatctttttaggcaatttggttccaaagttagctccaaagctatatacataacaggttgtt |
16659866 |
T |
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| Q |
407 |
ggagttgtgggttgccttataatgtctcagtgtattcttgcaatatgcttct |
458 |
Q |
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| T |
16659867 |
ggagttgtgggttgccttataatgtctcagtgtattcttgcaatatgcttct |
16659918 |
T |
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