View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_5 (Length: 428)
Name: NF16065_low_5
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 6056180 - 6055946
Alignment:
| Q |
183 |
aatttatttagataaa-tattaatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaacaatacccttgtttattcttcaa |
281 |
Q |
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| T |
6056180 |
aatttatttagataaaataataatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaaca--actcttgtttattcttcaa |
6056083 |
T |
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| Q |
282 |
attacatatgctagctttattcctaatcccccttgtttattctaatt-----nnnnnnnnnnctccatttattctttaaatttcaccactagcattattc |
376 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
6056082 |
attacatatgctagctttattcctaaccccccttgtttattctaattaaaaaaaaaaaaaaactccatttattctttaaatttcaccactagcattatac |
6055983 |
T |
|
| Q |
377 |
tcaaatctcagatgaa-taacatttagttgatgaatc |
412 |
Q |
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||||||||| |||| || |||||||||||||||| |
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| T |
6055982 |
ccaaatctcatttgaacaaatatttagttgatgaatc |
6055946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 183 - 412
Target Start/End: Original strand, 6070214 - 6070457
Alignment:
| Q |
183 |
aatttatttagataaatattaatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaacaatacccttgtttattcttcaaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
6070214 |
aatttatttagataaatattaatatgcataacacaaatcataagcttaaacatgtatgaacctgaaaatgtcacaacaacacccttgtttattcttcaaa |
6070313 |
T |
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| Q |
283 |
t----tacatatgctagctttattcctaatcccccttgtttattctaatt----------nnnnnnnnnnctccatttattctttaaatttcaccactag |
368 |
Q |
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| T |
6070314 |
ttacatacatatgctagctttattcctaaccacccttgtttattctaattaaaaaaaaaaaaaaaaaaaactccatttattctttaaatttcaccactag |
6070413 |
T |
|
| Q |
369 |
cattattctcaaatctcagatgaataacatttagttgatgaatc |
412 |
Q |
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| T |
6070414 |
cattataccgaaatctcatttgaacaatatttagttgatgaatc |
6070457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6056362 - 6056245
Alignment:
| Q |
1 |
atgaatagagtcctttatttacgaccaaacatcagattattaggaccgtttttccataaaaactaaagggtcaatacaaaaataaattatttaaaatgtt |
100 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6056362 |
atgaacagagtcccttatttacgaccaaacatcagattattaggaccgtttttccataaaaactaaagggtcgatacaaaaataaattatttaaaatgtt |
6056263 |
T |
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| Q |
101 |
ttgaaattgtctacgtca |
118 |
Q |
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| T |
6056262 |
ttgaaattgtctacgtca |
6056245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 328
Target Start/End: Original strand, 6067433 - 6067543
Alignment:
| Q |
221 |
cataagcttaaacatgta---tgaacccgaaaatgtcacaacaatacccttgtttattcttcaaattacatatgctagctttattcctaatcccccttgt |
317 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
6067433 |
cataagcttaaacatgtagtatgaatccgaaaatgtcacaacaacacccttgtttattcttcaaattacatatgctagctttattcccaaccccccttgt |
6067532 |
T |
|
| Q |
318 |
ttattctaatt |
328 |
Q |
| |
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||||||||||| |
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| T |
6067533 |
ttattctaatt |
6067543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 6067566 - 6067608
Alignment:
| Q |
342 |
catttattctttaaatttcaccactagcattattctcaaatct |
384 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
6067566 |
catttattctttaaatattaccactagcattattcccaaatct |
6067608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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