View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_6 (Length: 425)
Name: NF16065_low_6
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 55320154 - 55320416
Alignment:
| Q |
8 |
tagcaaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaa |
107 |
Q |
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| T |
55320154 |
tagcaaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccctgtgattccatgcaaa |
55320253 |
T |
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| Q |
108 |
taactgctccaacaatcattcacaggaggaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaa |
207 |
Q |
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| T |
55320254 |
taactgctccaacaatcattcacaggacgaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaa |
55320353 |
T |
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| Q |
208 |
catgccttgcaattatgttgaatgaagtaaagtttttagagaattatatgactataattatac |
270 |
Q |
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| T |
55320354 |
catgccttgcaattctgttgaatgaagtaaagtttttagagaattatatgactataattatac |
55320416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 31951279 - 31951512
Alignment:
| Q |
36 |
acctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaataactgctccaacaatcattcacaggag |
135 |
Q |
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| T |
31951279 |
acctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttatgattccatgcaaataactgctccaacaatcattcacaggag |
31951378 |
T |
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| Q |
136 |
gaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatgccttgcaattatgttgaatgaagt |
235 |
Q |
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| T |
31951379 |
gaaccaaatctatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatgccttgcaattctgttgaatgaagt |
31951478 |
T |
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| Q |
236 |
aaagtttttagagaattatatgactataattata |
269 |
Q |
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| T |
31951479 |
aaagtttttagagaattatatgactataattata |
31951512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 55320472 - 55320555
Alignment:
| Q |
327 |
tatcaatgtcacgtggttgagtaaatcaaatcgatcacaaacctgcccaattgttctcatcattgcttaagcccaatatataat |
410 |
Q |
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| T |
55320472 |
tatcaatgtcacgtggttgagtaaataaaatcgatcacaaacctgcccaattgttctcatcattgcttaagcccaatatataat |
55320555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 31951572 - 31951655
Alignment:
| Q |
327 |
tatcaatgtcacgtggttgagtaaatcaaatcgatcacaaacctgcccaattgttctcatcattgcttaagcccaatatataat |
410 |
Q |
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| T |
31951572 |
tatcaatgtcacgtgattgagtaaataaaattgatcccaaacctgcccaattgttcacatcattgcttaagcccaatatataat |
31951655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 2778252 - 2777994
Alignment:
| Q |
12 |
aaaggcaagtggacatgaaaagcaacctcgccataaaaatagaaccaaaaggcacaaacacaacactatatagtataccttgtgattacatgcaaataac |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||| |||||||||||| |
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| T |
2778252 |
aaaggcaagtggacatgaaaagcagcctcgccataaaaatagaaccaaaaggcacaaacgcaacactgtaaattataccttgtgattccatgcaaataac |
2778153 |
T |
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| Q |
112 |
tgctccaacaatcattcacaggaggaaccaaatttatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgttatgaaattaacaaaacatg |
211 |
Q |
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| T |
2778152 |
tgctccaacaatcattcacaggaggatacaaaactatcaagaaagcaaaatatagctttgtgtaagtaagtatcacttgtcatgaaattaacaaaacatg |
2778053 |
T |
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| Q |
212 |
ccttgcaattatgttgaatgaagtaaagtttttagagaattatatgactataattatac |
270 |
Q |
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| T |
2778052 |
ccttgcaattctgttgaatgaagtcaagtttttagagaattatatgactatatttatac |
2777994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 2777937 - 2777854
Alignment:
| Q |
327 |
tatcaatgtcacgtggttgagtaaatcaaatcgatcacaaacctgcccaattgttctcatcattgcttaagcccaatatataat |
410 |
Q |
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| T |
2777937 |
tatcaattccacatggtagagtaaataaaatcgatcacaaacctgcccaattgttctcatcattgcttaagcccaatatataat |
2777854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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