View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16066_high_10 (Length: 283)

Name: NF16066_high_10
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16066_high_10
NF16066_high_10
[»] chr5 (7 HSPs)
chr5 (74-151)||(37440376-37440453)
chr5 (37-147)||(37226757-37226867)
chr5 (74-147)||(37221321-37221394)
chr5 (81-148)||(37387066-37387133)
chr5 (153-226)||(37326374-37326448)
chr5 (229-270)||(37326280-37326321)
chr5 (74-124)||(37195845-37195895)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 37440376 - 37440453
Alignment:
Q  74 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttcagcc 151  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37440376 aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttcagcc 37440453  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 37226757 - 37226867
Alignment:
Q  37 acacaataccaactgttgatagtgtcgaagcctctcaaagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttct 136  Q
    ||||||||| ||  |||||||||||| ||| || |  |||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  37226757 acacaatactaagcgttgatagtgtccaagtctatacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttct 37226856  T
Q  137 gtacgagcttc 147  Q
     ||| ||||||    
T  37226857 ctacaagcttc 37226867  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 37221321 - 37221394
Alignment:
Q  74 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttc 147  Q
    |||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  37221321 aagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc 37221394  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 37387133 - 37387066
Alignment:
Q  81 aatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttca 148  Q
    |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||    
T  37387133 aatgttccattcccttgtgattgcattaatgacgagtttcttggtcacacgtttttgtacgagtttca 37387066  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 37326448 - 37326374
Alignment:
Q  153 attcaggttgaaattcataagacatttttcaaatcaattcgaatctt-ctatgaatcgtaaaatgattaccaata 226  Q
    |||||||||| || ||||||||||||||| |||||||||  |||||| ||||||||| |||||||||||||||||    
T  37326448 attcaggttgtaactcataagacattttttaaatcaatttaaatcttactatgaatcataaaatgattaccaata 37326374  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 37326321 - 37326280
Alignment:
Q  229 catatacgaacatcaaaatgattcaagattcaaatcataaat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37326321 catatacgaacatcaaaatgattcaagattcaaatcataaat 37326280  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 37195845 - 37195895
Alignment:
Q  74 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttgg 124  Q
    |||||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  37195845 aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 37195895  T

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