View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16066_high_11 (Length: 265)
Name: NF16066_high_11
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_high_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 27821980 - 27821729
Alignment:
| Q |
15 |
aagacctattttctttttcaacggatgttatttcatacatatgtatctacttaagtattaatatggacgaaaaaatgtagttgagagtggaaacccacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27821980 |
aagacctattttctttttcaacggatgttatttcatacatatgtatctacttaagtattaatatggacgaaaaaatgtagttgagagtggaaacccacta |
27821881 |
T |
|
| Q |
115 |
aaagtggctagctataa-ctccggcggaaattagtctgacaaaggtgctggatacttcacaccaatagcacgactaaccaaaaataataacacacatagt |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27821880 |
aaagtggctagctataatctccggcggaaattagtctgacaaaggtgctggatacttcacaccaatagcacgactaaccaaaaataataacacacatagt |
27821781 |
T |
|
| Q |
214 |
aatgtaagtaacttacatgtttgtcaatgtaatctccccaaaacttggcttg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27821780 |
aatgtaagtaacttacatgtttgtcaatgtaatctccccaaaacttggcttg |
27821729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 27824752 - 27824709
Alignment:
| Q |
222 |
taacttacatgtttgtcaatgtaatctccccaaaacttggcttg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27824752 |
taacttacatgtttgtcaatgtaatctccccaaaacttagcttg |
27824709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University