View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_high_14 (Length: 236)
Name: NF16066_high_14
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_high_14 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 713960 - 713728
Alignment:
| Q |
4 |
atgtcgaagaatatatcagcactgctaaagaaaggaatcagagttctaatctctgatcacgacgttcaatctgacaattttacaatttttactgattaag |
103 |
Q |
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| T |
713960 |
atgtcgaagcatatatcagcactgctaaagaaaggaatcagagttctaatctctgatcacgacgttcaatctgacaattttacaatttttactgattaag |
713861 |
T |
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| Q |
104 |
ataggcgtatggacaattgattattattcttattagagggaaagttgaacacataactctcttatgtttcttcctcaaaccccaatacgacacttccata |
203 |
Q |
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| T |
713860 |
ataggcgtatggacagttgattattattcttattagagggaaagttgaacacataactctcttatgtttcttcctcaaaccccaatacgacacttccata |
713761 |
T |
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| Q |
204 |
ttatcgaacatattaaaatcaaccgacccctga |
236 |
Q |
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| T |
713760 |
ttatcgaacatattaaaaccaaacgacccctga |
713728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 713722 - 713680
Alignment:
| Q |
147 |
gttgaacacataactctcttatgtttcttcctcaaaccccaat |
189 |
Q |
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| T |
713722 |
gttgaacacataactctcttatgtttcttcctcaaaccccaat |
713680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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