View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16066_high_7 (Length: 332)

Name: NF16066_high_7
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16066_high_7
NF16066_high_7
[»] chr3 (1 HSPs)
chr3 (34-314)||(39854730-39855024)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 34 - 314
Target Start/End: Original strand, 39854730 - 39855024
Alignment:
Q  34 tattttatggacaataattttgtggcgatcaatagttcattttgtgtatttttaaaaagttctgaaaatatgttttacgtgttgatttgtttacctaatc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854730 tattttatggacaataattttgtggcgatcaatagttcattttgtgtatttttaaaaagttctgaaaatatgttttacgtgttgatttgtttacctaatc 39854829  T
Q  134 ttcacct--------------aagaaatagttttgctaagtaatcagttcatcggccattctatatgcatgcatgtatatattatgattgatgaataata 219  Q
    |||||||              ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854830 ttcacctctttaatttgatctaagaaatagttttgctaagtaatgagttcatcggccattctatatgcatgcatgtatatattatgattgatgaataata 39854929  T
Q  220 atgcaaataatttttactactttatttccacattaacgcaatcaccataacaccctttgctagttaatagttgacttatcggagaaagtatgatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854930 atgcaaataatttttactactttatttccacattaacgcaatcaccataacaccctttgctagttaatagttgacttatcggagaaagtatgatt 39855024  T

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