View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16066_low_11 (Length: 326)

Name: NF16066_low_11
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16066_low_11
NF16066_low_11
[»] chr3 (30 HSPs)
chr3 (20-314)||(36465332-36465626)
chr3 (22-66)||(23022047-23022091)
chr3 (20-63)||(31311664-31311707)
chr3 (22-64)||(27330110-27330152)
chr3 (20-62)||(50935459-50935501)
chr3 (22-63)||(11123667-11123708)
chr3 (22-61)||(13243595-13243634)
chr3 (22-61)||(53583726-53583765)
chr3 (20-59)||(54410724-54410763)
chr3 (20-59)||(55219901-55219940)
chr3 (22-59)||(4230848-4230885)
chr3 (20-61)||(42828008-42828049)
chr3 (20-61)||(51720860-51720901)
chr3 (21-61)||(18763934-18763974)
chr3 (20-68)||(22981425-22981473)
chr3 (22-62)||(40908511-40908551)
chr3 (20-59)||(38698828-38698867)
chr3 (21-59)||(30361644-30361682)
chr3 (23-61)||(37178242-37178280)
chr3 (22-60)||(37218168-37218206)
chr3 (22-60)||(41889734-41889772)
chr3 (22-59)||(10825749-10825786)
chr3 (20-53)||(22977835-22977868)
chr3 (22-59)||(27128191-27128228)
chr3 (22-59)||(30438267-30438304)
chr3 (22-59)||(37787285-37787322)
chr3 (22-59)||(44841226-44841263)
chr3 (22-59)||(50546473-50546510)
chr3 (20-56)||(50535960-50535996)
chr3 (25-61)||(52745654-52745690)
[»] scaffold0208 (1 HSPs)
scaffold0208 (20-61)||(3860-3901)
[»] chr8 (25 HSPs)
chr8 (20-61)||(39859975-39860016)
chr8 (20-59)||(38576588-38576627)
chr8 (22-62)||(18957435-18957475)
chr8 (20-68)||(40618523-40618571)
chr8 (22-61)||(3703168-3703207)
chr8 (22-61)||(16097643-16097682)
chr8 (22-61)||(17946583-17946622)
chr8 (22-61)||(23345171-23345210)
chr8 (20-59)||(45407245-45407284)
chr8 (22-63)||(17852387-17852428)
chr8 (20-61)||(23625647-23625688)
chr8 (22-59)||(30475974-30476011)
chr8 (22-59)||(38099294-38099331)
chr8 (20-61)||(42647332-42647373)
chr8 (22-62)||(38059242-38059282)
chr8 (22-61)||(278762-278801)
chr8 (22-61)||(637051-637090)
chr8 (22-61)||(822854-822893)
chr8 (20-59)||(6096859-6096898)
chr8 (22-61)||(26965364-26965403)
chr8 (22-61)||(41182400-41182439)
chr8 (21-63)||(35019233-35019275)
chr8 (22-59)||(4621484-4621521)
chr8 (20-61)||(30112208-30112249)
chr8 (20-61)||(40302414-40302455)
[»] chr5 (20 HSPs)
chr5 (20-60)||(7179660-7179700)
chr5 (19-62)||(9985358-9985401)
chr5 (22-63)||(9593865-9593906)
chr5 (22-62)||(822817-822857)
chr5 (22-62)||(12501439-12501479)
chr5 (22-62)||(39590747-39590787)
chr5 (20-55)||(15527448-15527483)
chr5 (20-58)||(3033069-3033107)
chr5 (22-60)||(30128626-30128664)
chr5 (22-60)||(31547465-31547503)
chr5 (20-61)||(19505076-19505117)
chr5 (22-59)||(37938494-37938531)
chr5 (22-62)||(20544188-20544228)
chr5 (21-61)||(27552698-27552738)
chr5 (22-61)||(744072-744111)
chr5 (22-61)||(27018122-27018161)
chr5 (22-53)||(29391015-29391046)
chr5 (21-59)||(6720917-6720955)
chr5 (20-53)||(5099856-5099889)
chr5 (20-61)||(15527307-15527348)
[»] chr4 (29 HSPs)
chr4 (20-64)||(43304879-43304923)
chr4 (19-62)||(23931588-23931631)
chr4 (22-61)||(7489295-7489334)
chr4 (22-61)||(7489377-7489416)
chr4 (20-59)||(13530035-13530074)
chr4 (20-59)||(17518858-17518897)
chr4 (22-61)||(54921411-54921450)
chr4 (20-62)||(46719722-46719764)
chr4 (22-59)||(4655003-4655040)
chr4 (20-61)||(7113889-7113930)
chr4 (22-59)||(8941264-8941301)
chr4 (20-61)||(10659193-10659234)
chr4 (20-61)||(10873338-10873379)
chr4 (20-61)||(26923848-26923889)
chr4 (22-59)||(30823697-30823734)
chr4 (20-53)||(38623647-38623680)
chr4 (20-61)||(47649399-47649440)
chr4 (22-59)||(49875755-49875792)
chr4 (20-52)||(19871268-19871300)
chr4 (25-61)||(43940420-43940456)
chr4 (22-61)||(20352026-20352065)
chr4 (22-61)||(23417198-23417237)
chr4 (22-61)||(41039572-41039611)
chr4 (20-59)||(47805597-47805636)
chr4 (20-54)||(8081235-8081269)
chr4 (20-62)||(14270132-14270174)
chr4 (20-58)||(24577948-24577986)
chr4 (20-62)||(34074995-34075037)
chr4 (20-61)||(19869707-19869748)
[»] chr2 (19 HSPs)
chr2 (20-71)||(24457832-24457884)
chr2 (20-63)||(1053132-1053175)
chr2 (20-64)||(7575655-7575699)
chr2 (22-62)||(21191883-21191923)
chr2 (19-59)||(38932545-38932585)
chr2 (20-59)||(2290386-2290425)
chr2 (21-58)||(3849795-3849832)
chr2 (22-61)||(3904919-3904958)
chr2 (22-61)||(14004023-14004062)
chr2 (22-61)||(28389954-28389993)
chr2 (21-59)||(10455710-10455748)
chr2 (22-59)||(75574-75611)
chr2 (20-61)||(20919093-20919133)
chr2 (22-59)||(25225421-25225458)
chr2 (20-53)||(39159852-39159885)
chr2 (20-53)||(39209309-39209342)
chr2 (22-59)||(39965180-39965217)
chr2 (20-60)||(15400952-15400992)
chr2 (20-64)||(33182877-33182921)
[»] chr7 (24 HSPs)
chr7 (20-63)||(33982630-33982673)
chr7 (20-62)||(41287552-41287594)
chr7 (22-62)||(4861943-4861983)
chr7 (21-61)||(23592538-23592578)
chr7 (22-61)||(723484-723523)
chr7 (22-61)||(4657018-4657057)
chr7 (20-59)||(9659011-9659050)
chr7 (22-61)||(16273908-16273947)
chr7 (20-59)||(17286327-17286366)
chr7 (22-61)||(20122357-20122396)
chr7 (22-61)||(41338313-41338352)
chr7 (20-59)||(47505707-47505746)
chr7 (22-64)||(38179656-38179698)
chr7 (22-60)||(44456896-44456934)
chr7 (20-62)||(47251965-47252007)
chr7 (20-62)||(48684606-48684648)
chr7 (22-59)||(3412676-3412713)
chr7 (22-59)||(40013623-40013660)
chr7 (22-62)||(19063903-19063943)
chr7 (21-61)||(41405938-41405978)
chr7 (22-61)||(33244607-33244646)
chr7 (22-59)||(47906947-47906984)
chr7 (21-61)||(1602435-1602475)
chr7 (21-61)||(8391439-8391479)
[»] chr6 (9 HSPs)
chr6 (22-68)||(16922279-16922325)
chr6 (22-62)||(17557571-17557611)
chr6 (22-62)||(23582244-23582284)
chr6 (22-61)||(14105969-14106008)
chr6 (22-60)||(5686338-5686376)
chr6 (21-58)||(28580988-28581025)
chr6 (22-62)||(27784456-27784496)
chr6 (22-61)||(4587861-4587900)
chr6 (20-61)||(24158987-24159028)
[»] chr1 (15 HSPs)
chr1 (20-60)||(30301000-30301040)
chr1 (20-60)||(44299066-44299106)
chr1 (22-61)||(31032094-31032133)
chr1 (20-59)||(35956332-35956371)
chr1 (20-63)||(36732502-36732545)
chr1 (22-62)||(7154880-7154920)
chr1 (21-61)||(46464576-46464616)
chr1 (20-59)||(7557539-7557578)
chr1 (22-61)||(33706588-33706627)
chr1 (22-61)||(44510431-44510470)
chr1 (28-61)||(30837762-30837795)
chr1 (20-61)||(33004463-33004504)
chr1 (20-61)||(43847767-43847807)
chr1 (20-60)||(5328882-5328922)
chr1 (31-59)||(12769663-12769691)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-61)||(56522-56561)
[»] scaffold0779 (1 HSPs)
scaffold0779 (22-62)||(178-218)
[»] scaffold0115 (1 HSPs)
scaffold0115 (22-59)||(30718-30755)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-53)||(94715-94748)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 36465626 - 36465332
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccataaaaacacggtgtgagtgtctatatatatttgtgttccttaaccctttctctttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465626 gtaaataccctctaaacaagagagggtaatctagaaaaaaccataaaaacacggtgtgagtgtctatatatatttgtgttccttaaccctttctctttga 36465527  T
Q  120 caaaattggtttcaagaagactgaaatgttggtcttgcatgggttgtaatggaagagaaaactaacatttcagtcattttgccggaattccccaacactt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465526 caaaattggtttcaagaagactgaaatgttggtcttgcatgggttgtaatggaagagaaaactaacatttcagtcattttgccggaattccccaacactt 36465427  T
Q  220 gttagctacttcgtgggttgcagtcttgtagagcagtatgttaagaaaagaaaacagctatacaattaataataaagaaaacatgcttcaattca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465426 gttagctacttcgtgggttgcagtcttgtagagcagtatgttaagaaaagaaaacagctatacaattaataataaagaaaacatgcttcaattca 36465332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 23022047 - 23022091
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccataaa 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  23022047 aaataccctctaaataagagagggtaatctagaaaaaaccataaa 23022091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 31311707 - 31311664
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  31311707 gtaaatacgctctaaacaagagagggtaatctagaaaaaaccat 31311664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 27330152 - 27330110
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccata 64  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  27330152 aaataccctctaaataagagagggtaatctagaaaaaaccata 27330110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 50935501 - 50935459
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  50935501 gtaaataccctctaaacaagagagggtaatgtagaaaaaacca 50935459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 11123667 - 11123708
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  11123667 aaataccctctaaataagagagggtaatctagaaaaaaccat 11123708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 13243595 - 13243634
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  13243595 aaataccctctaaataagagagggtaatctagaaaaaacc 13243634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 53583726 - 53583765
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  53583726 aaataccctctaaataagagagggtaatctagaaaaaacc 53583765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 54410724 - 54410763
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  54410724 gtaaataccctctaaacaagatagggtaatctagaaaaaa 54410763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 55219901 - 55219940
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  55219901 gtaaataccctctaaataagagagggtaatctagaaaaaa 55219940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 4230885 - 4230848
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4230885 aaataccctctaaataagagagggtaatctagaaaaaa 4230848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 42828008 - 42828049
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  42828008 gtaaataccctctaaacaaaagatggtaatctagaaaaaacc 42828049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 51720901 - 51720860
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  51720901 gtaaatactctctaaataagagagggtaatctagaaaaaacc 51720860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 18763934 - 18763974
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  18763934 taaataccctctaaataagagaaggtaatctagaaaaaacc 18763974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 22981425 - 22981473
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccataaaaa 68  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||| ||||    
T  22981425 gtaaatatcctctaaacaagacagggtaatgtagaaaaaaccattaaaa 22981473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 40908511 - 40908551
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  40908511 aaataccctctaaataagagagggtaatctaaaaaaaacca 40908551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 38698828 - 38698867
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  38698828 gtaaatatcctctaaacaagagagggtaatctaaaaaaaa 38698867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 30361682 - 30361644
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  30361682 taaataccttctaaacaagatagggtaatctagaaaaaa 30361644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 37178280 - 37178242
Alignment:
Q  23 aataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  37178280 aatacgctctaaacaagagagggtaatttagaaaaaacc 37178242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 37218206 - 37218168
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  37218206 aaataccctctaaataagagagggtaatctaaaaaaaac 37218168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 41889734 - 41889772
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||||||||||||||||| || |||||||    
T  41889734 aaataccctctaaacaagagagggtaatgtaaaaaaaac 41889772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 10825786 - 10825749
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  10825786 aaataccccctaaacaagagagggtaatctaaaaaaaa 10825749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 22977868 - 22977835
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    |||||||||| |||||||||||||||||||||||    
T  22977868 gtaaataccccctaaacaagagagggtaatctag 22977835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 27128191 - 27128228
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  27128191 aaataccctctaaataagatagggtaatctagaaaaaa 27128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 30438304 - 30438267
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  30438304 aaataccctctaaataagagagggtaatctaaaaaaaa 30438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 37787285 - 37787322
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  37787285 aaataccctctaaataagagagggtaatctaaaaaaaa 37787322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 44841263 - 44841226
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  44841263 aaataccctctaaataagagacggtaatctagaaaaaa 44841226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 50546510 - 50546473
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  50546510 aaataccctataaataagagagggtaatctagaaaaaa 50546473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 50535996 - 50535960
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaa 56  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  50535996 gtaaataccctataaacaagagagggtaatttagaaa 50535960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 52745690 - 52745654
Alignment:
Q  25 taccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  52745690 taccctctaaataagagagggtgatctagaaaaaacc 52745654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 3901 - 3860
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3901 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 3860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 39859975 - 39860016
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39859975 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 39860016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 38576627 - 38576588
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38576627 gtaaataccctctaaacaagagagggtaatctagaaaaaa 38576588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18957435 - 18957475
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  18957435 aaataccctctaaataagagagggtaatctagaaaaaacca 18957475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 40618523 - 40618571
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccataaaaa 68  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  40618523 gtaaataccccctaaacaagatagggtaatctagaaaaaaccatgaaaa 40618571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 3703207 - 3703168
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  3703207 aaataccctctaaataagagagggtaatctagaaaaaacc 3703168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 16097643 - 16097682
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  16097643 aaataccctctaaataagagagggtaatctagaaaaaacc 16097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 17946622 - 17946583
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  17946622 aaataccctctaaataagagagggtaatctagaaaaaacc 17946583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 23345210 - 23345171
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  23345210 aaataccctctaaataagagagggtaatctagaaaaaacc 23345171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 45407284 - 45407245
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  45407284 gtaaataccctctaaacaagagaggataatctagaaaaaa 45407245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 17852428 - 17852387
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  17852428 aaataccctctaaatatgagagggtaatctagaaaaaaccat 17852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 23625688 - 23625647
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  23625688 gtaaataccttctaaacaagagagggtaatgtagaaaaaacc 23625647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 30476011 - 30475974
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30476011 aaataccctataaacaagagagggtaatctagaaaaaa 30475974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 38099294 - 38099331
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||||||||||||||| |||||||||    
T  38099294 aaataccctctaaacaagagagggtaatttagaaaaaa 38099331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 42647332 - 42647373
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  42647332 gtaaataccctctaaacaatagagggtaatctaaaaaaaacc 42647373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 38059282 - 38059242
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  38059282 aaataccctctaaataagagagggtaatctaaaaaaaacca 38059242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 278762 - 278801
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  278762 aaataccctctaaatatgagagggtaatctagaaaaaacc 278801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 637090 - 637051
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  637090 aaataccctctaaatatgagagggtaatctagaaaaaacc 637051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 822893 - 822854
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  822893 aaataccctctaaatatgagagggtaatctagaaaaaacc 822854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 6096859 - 6096898
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  6096859 gtaaatatcctctaaataagagagggtaatctagaaaaaa 6096898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 26965403 - 26965364
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  26965403 aaataccctctaaataagagagggtaatttagaaaaaacc 26965364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 41182439 - 41182400
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  41182439 aaataccctctaaataagagaggataatctagaaaaaacc 41182400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 35019275 - 35019233
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    ||||||||||||||| |||| |||||||| |||||||||||||    
T  35019275 taaataccctctaaataagatagggtaatgtagaaaaaaccat 35019233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 4621521 - 4621484
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  4621521 aaataccctctaaataagatagggtaatctagaaaaaa 4621484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 30112208 - 30112249
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||| | |||||||||||||||| ||||||||||||||    
T  30112208 gtaaatactccctaaacaagagagggtcatctagaaaaaacc 30112249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 40302455 - 40302414
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  40302455 gtaaataccctctaaacaagagagaataatatagaaaaaacc 40302414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 7179700 - 7179660
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7179700 gtaaataccctctaaacaagagagggtaatctagaaaaaac 7179660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 9985401 - 9985358
Alignment:
Q  19 agtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  9985401 agtaaataccctctaaacaagagagggtaatttagaaaaaacca 9985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 9593865 - 9593906
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  9593865 aaataccctctaaataagagagggtaatctagaaaaaaccat 9593906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 822857 - 822817
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  822857 aaataccctctaaataagagagggtaatctagaaaaaacca 822817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 12501439 - 12501479
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  12501439 aaataccctctaaataagagagggtaatctagaaaaaacca 12501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 39590747 - 39590787
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  39590747 aaataccctctaaataagagagggtaatctagaaaaaacca 39590787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15527448 - 15527483
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaa 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  15527448 gtaaataccctctaaacaagagagggtaatctagaa 15527483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 3033107 - 3033069
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaa 58  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3033107 gtaaataccctctaaacaagagagggtaatgtagaaaaa 3033069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 30128664 - 30128626
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30128664 aaataccctctaaataagagagggtaatctagaaaaaac 30128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 31547503 - 31547465
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31547503 aaataccctctaaacaagaaagggtaatctagaaaaaac 31547465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 19505076 - 19505117
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  19505076 gtaaataccctctaaacaagagagggtaatctatgaaaaacc 19505117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 37938531 - 37938494
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37938531 aaataccctctaaataagagagggtaatctagaaaaaa 37938494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 20544228 - 20544188
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  20544228 aaataccctctaaataagagaggataatctagaaaaaacca 20544188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 27552698 - 27552738
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  27552698 taaataccctctaaacaaaagagagtaatctagaaaaaacc 27552738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 744111 - 744072
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  744111 aaataccctctaaataagagaggataatctagaaaaaacc 744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 27018161 - 27018122
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  27018161 aaataccttctaaataagagagggtaatctagaaaaaacc 27018122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 29391015 - 29391046
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctag 53  Q
    ||||||||||||||||||||||||||||||||    
T  29391015 aaataccctctaaacaagagagggtaatctag 29391046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 6720917 - 6720955
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  6720917 taaataccctctaaacaagatagggtaatgtagaaaaaa 6720955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 5099889 - 5099856
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    |||||||||| |||||||||||||||||||||||    
T  5099889 gtaaataccccctaaacaagagagggtaatctag 5099856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 15527307 - 15527348
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  15527307 gtaaataccctctagacaagagagagtaatgtagaaaaaacc 15527348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 43304879 - 43304923
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccata 64  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  43304879 gtaaataccctctaaacaagagagggtaatctaaaaaaaaccata 43304923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 23931631 - 23931588
Alignment:
Q  19 agtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  23931631 agtaaataccctctaaacaagagagggtaatctagaaaatacca 23931588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 7489295 - 7489334
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7489295 aaataccctctaaataagagagggtaatctagaaaaaacc 7489334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 7489377 - 7489416
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7489377 aaataccctctaaataagagagggtaatctagaaaaaacc 7489416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 13530074 - 13530035
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13530074 gtaaataccctctaaacaagatagggtaatctagaaaaaa 13530035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 17518897 - 17518858
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  17518897 gtaaataccgtctaaacaagagagggtaatctagaaaaaa 17518858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 54921411 - 54921450
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  54921411 aaataccctctaaataagagagggtaatctagaaaaaacc 54921450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 46719722 - 46719764
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||||| |||||||||||||||| |||||||||    
T  46719722 gtaaataccctctaaataagagagggtaatctataaaaaacca 46719764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 4655003 - 4655040
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  4655003 aaataccctctaaacaagatagggtaatctagaaaaaa 4655040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 7113889 - 7113930
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  7113889 gtaaataccctctaaacaagagagggtaatgcagaaaaaacc 7113930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 8941264 - 8941301
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8941264 aaataccctctaaataagagagggtaatctagaaaaaa 8941301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 10659193 - 10659234
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  10659193 gtaaatactctctaaacaagagagggtaatgtagaaaaaacc 10659234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 10873338 - 10873379
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  10873338 gtaaatactctctaaacaagagagggtaatgtagaaaaaacc 10873379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 26923848 - 26923889
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  26923848 gtaaatatcctctaaacaagagagggtaatgtagaaaaaacc 26923889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 30823734 - 30823697
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30823734 aaataccctctaaataagagagggtaatctagaaaaaa 30823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 38623647 - 38623680
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    ||||||||||||||||||||||||||||||||||    
T  38623647 gtaaataccctctaaacaagagagggtaatctag 38623680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 47649440 - 47649399
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  47649440 gtaaataccctctaaacaagatagggtaatgtagaaaaaacc 47649399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 49875755 - 49875792
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  49875755 aaataccctctaaacaagagagggtaatctaaaaaaaa 49875792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 19871268 - 19871300
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatcta 52  Q
    |||||||||||||||||||||||||||||||||    
T  19871268 gtaaataccctctaaacaagagagggtaatcta 19871300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 43940420 - 43940456
Alignment:
Q  25 taccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||||| |||||||||||    
T  43940420 taccctctaaacaagagagggtaatgtagaaaaaacc 43940456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 20352065 - 20352026
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  20352065 aaatactctctaaataagagagggtaatctagaaaaaacc 20352026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 23417237 - 23417198
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  23417237 aaataccctctaaataagagagggtaatctagcaaaaacc 23417198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 41039611 - 41039572
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  41039611 aaataccttctaaataagagagggtaatctagaaaaaacc 41039572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 47805636 - 47805597
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  47805636 gtaaatatcctctaaacaagatagggtaatctagaaaaaa 47805597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 8081235 - 8081269
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctaga 54  Q
    |||||||||| ||||||||||||||||||||||||    
T  8081235 gtaaataccccctaaacaagagagggtaatctaga 8081269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 14270132 - 14270174
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||| ||||||||||||||||||  ||||||||||||    
T  14270132 gtaaataccccctaaacaagagagggtaacgtagaaaaaacca 14270174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 24577948 - 24577986
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaa 58  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  24577948 gtaaataccctataaacaagagagggtaatgtagaaaaa 24577986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 34074995 - 34075037
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  34074995 gtaaatacactttaaacaagagagagtaatctagaaaaaacca 34075037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 19869748 - 19869707
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  19869748 gtaaataccctataaacaagagaggataatgtagaaaaaacc 19869707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 24457884 - 24457832
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa-ccataaaaacac 71  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24457884 gtaaataccctctaaacaagagagggtaatgtagaaaaaagccataaaaacac 24457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1053175 - 1053132
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  1053175 gtaaataccctctaaacaagagagagtaatctagaaaaaaccat 1053132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 7575655 - 7575699
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccata 64  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||    
T  7575655 gtaaataccccctaaacaagagagggtaatgtagaaaaaaccata 7575699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 21191883 - 21191923
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  21191883 aaataccctctaaacaagagagggtaatgtagaaaaaacca 21191923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 38932545 - 38932585
Alignment:
Q  19 agtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  38932545 agtaaataccctctaaacaagagagggtaatgtagaaaaaa 38932585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 2290425 - 2290386
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  2290425 gtaaataccctctaaacaagagagggtaatctaaaaaaaa 2290386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 3849832 - 3849795
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaa 58  Q
    |||||||||| |||||||||||||||||||||||||||    
T  3849832 taaataccctttaaacaagagagggtaatctagaaaaa 3849795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 3904958 - 3904919
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  3904958 aaataccctctaaataagagagggtaatctaaaaaaaacc 3904919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 14004062 - 14004023
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  14004062 aaataccctctaaataagagagggtaatctaaaaaaaacc 14004023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 28389993 - 28389954
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  28389993 aaataccctctaaataagagagggtaatctaaaaaaaacc 28389954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 10455710 - 10455748
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  10455710 taaataccctctaaacaagagaggataatgtagaaaaaa 10455748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 75611 - 75574
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| || ||||||||||||||||||||    
T  75611 aaataccctctaaataaaagagggtaatctagaaaaaa 75574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 20919133 - 20919093
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  20919133 gtaaataccctctaaacaagaga-ggtaatgtagaaaaaacc 20919093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 25225421 - 25225458
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  25225421 aaataccctctaaataagagagggtaatctaaaaaaaa 25225458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 39159885 - 39159852
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    |||||||| |||||||||||||||||||||||||    
T  39159885 gtaaatactctctaaacaagagagggtaatctag 39159852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 39209309 - 39209342
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    |||||||| |||||||||||||||||||||||||    
T  39209309 gtaaatactctctaaacaagagagggtaatctag 39209342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 39965217 - 39965180
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  39965217 aaataccctctaaataagagagggtaatccagaaaaaa 39965180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 15400952 - 15400992
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  15400952 gtaaataccctctaaacaagatagagtaatctaaaaaaaac 15400992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33182877 - 33182921
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccata 64  Q
    ||||||||| |||||| || |||||||||| ||||||||||||||    
T  33182877 gtaaataccatctaaataaaagagggtaatgtagaaaaaaccata 33182921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 33982630 - 33982673
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  33982630 gtaaataccctctaaacaagagagggtaatgtagaaaaaaccat 33982673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 41287594 - 41287552
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  41287594 gtaaataccctctaaacaagagagggttatctagaaaaaacca 41287552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 4861943 - 4861983
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  4861943 aaataccctctaaataagagagggtaatctagaaaaaacca 4861983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 23592578 - 23592538
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  23592578 taaataccctctaaataagagagggtaatctagaaaaaacc 23592538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 723523 - 723484
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  723523 aaataccctctaaataagagagggtaatctagaaaaaacc 723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 4657057 - 4657018
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4657057 aaataccctctaaataagagagggtaatctagaaaaaacc 4657018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 9659050 - 9659011
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  9659050 gtaaataccctctaaacaagatagggtaatctagaaaaaa 9659011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 16273947 - 16273908
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  16273947 aaataccctctaaataagagagggtaatctagaaaaaacc 16273908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 17286366 - 17286327
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  17286366 gtaaataccctctaaacaagagagggtaatctaaaaaaaa 17286327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 20122357 - 20122396
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  20122357 aaataccctctaaataagagagggtaatctagaaaaaacc 20122396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 41338313 - 41338352
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  41338313 aaataccctctaaataagagagggtaatctagaaaaaacc 41338352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 47505707 - 47505746
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  47505707 gtaaatatcctctaaacaagagagggtaatctagaaaaaa 47505746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 38179698 - 38179656
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccata 64  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  38179698 aaataccctctaaataagagagggtaatctaaaaaaaaccata 38179656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 44456934 - 44456896
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44456934 aaataccctctaaataagagagggtaatctagaaaaaac 44456896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 47252007 - 47251965
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  47252007 gtaaataccccctaaacaagagagggtaatgtagaaaaaacca 47251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 48684606 - 48684648
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  48684606 gtaaatatcctctaaataagagagggtaatctagaaaaaacca 48684648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 3412713 - 3412676
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3412713 aaataccctctaaataagagagggtaatctagaaaaaa 3412676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 40013660 - 40013623
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40013660 aaataccctctaaataagagagggtaatctagaaaaaa 40013623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 19063943 - 19063903
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  19063943 aaatatcctctaaacaagagagggtaatgtagaaaaaacca 19063903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 41405978 - 41405938
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  41405978 taaataccccctaaacaagagagggtaatgtagaaaaaacc 41405938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 33244646 - 33244607
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  33244646 aaatactctctaaataagagagggtaatctagaaaaaacc 33244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 47906984 - 47906947
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  47906984 aaataccctctaaataagagagggaaatctagaaaaaa 47906947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 1602435 - 1602475
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||| ||||||| |||||||||| |||||||||||    
T  1602435 taaataccctataaacaaaagagggtaatgtagaaaaaacc 1602475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 8391479 - 8391439
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  8391479 taaataccccataaacaagagagggtaatctaggaaaaacc 8391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 16922279 - 16922325
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaaccataaaaa 68  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  16922279 aaataccctctaaataagagagggtaatctagaaaaaaccattaaaa 16922325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 17557611 - 17557571
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  17557611 aaataccctctaaataagagagggtaatctagaaaaaacca 17557571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 23582244 - 23582284
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  23582244 aaataccctctaaataagagagggtaatctagaaaaaacca 23582284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 14105969 - 14106008
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  14105969 aaataccctctaaataagagagggtaatctagaaaaaacc 14106008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 5686376 - 5686338
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  5686376 aaataccctctaaacaaaagagggtaatctagaaaaaac 5686338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 28580988 - 28581025
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaa 58  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28580988 taaataccctctaaacaagagagggtaatctaaaaaaa 28581025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27784456 - 27784496
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  27784456 aaataccctctaaataagagagggtaatctaaaaaaaacca 27784496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 4587900 - 4587861
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  4587900 aaatatcctctaaataagagagggtaatctagaaaaaacc 4587861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 24159028 - 24158987
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  24159028 gtaaataccccctaaacaaaagagggtaatgtagaaaaaacc 24158987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 30301040 - 30301000
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30301040 gtaaataccctctaaataagagagggtaatctagaaaaaac 30301000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 44299106 - 44299066
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44299106 gtaaataccctctaaacaagagagggtaatgtagaaaaaac 44299066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 31032094 - 31032133
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  31032094 aaataccctctaaataagagagggtaatctagaaaaaacc 31032133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 35956332 - 35956371
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  35956332 gtaaataccctctaaacaagagagggtaatatagaaaaaa 35956371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36732502 - 36732545
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaaccat 63  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  36732502 gtaaataccctctaaataagcgagggtaatctagaaaaaaccat 36732545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7154880 - 7154920
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  7154880 aaataccctctaaataagagagggtaatctaaaaaaaacca 7154920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 46464576 - 46464616
Alignment:
Q  21 taaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  46464576 taaacaccccctaaacaagagagggtaatctagaaaaaacc 46464616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 7557539 - 7557578
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  7557539 gtaaataccctctagacaagagagagtaatctagaaaaaa 7557578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 33706588 - 33706627
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  33706588 aaataccctctaaataagatagggtaatctagaaaaaacc 33706627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 44510470 - 44510431
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  44510470 aaataccctctaaataagatagggtaatctagaaaaaacc 44510431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 30837795 - 30837762
Alignment:
Q  28 cctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||| |||||||||||||||||||||||||    
T  30837795 cctctaaataagagagggtaatctagaaaaaacc 30837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 33004504 - 33004463
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  33004504 gtaaataccccctaaacaagagagagtaatttagaaaaaacc 33004463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 43847767 - 43847807
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  43847767 gtaaataccc-ctaaacaagagagggtaatgtagaaaaaacc 43847807  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 5328882 - 5328922
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctagaaaaaac 60  Q
    |||||| ||| |||||||||||||||||||||| |||||||    
T  5328882 gtaaatgccccctaaacaagagagggtaatctaaaaaaaac 5328922  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 12769663 - 12769691
Alignment:
Q  31 ctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||||||||||||||||||    
T  12769663 ctaaacaagagagggtaatctagaaaaaa 12769691  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 56522 - 56561
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacc 61  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  56522 aaataccctctaaataagagagggtaatctagaaaaaacc 56561  T

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Target: scaffold0779 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 178 - 218
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaacca 62  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  178 aaataccctctaaataagagagggtaatatagaaaaaacca 218  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 30718 - 30755
Alignment:
Q  22 aaataccctctaaacaagagagggtaatctagaaaaaa 59  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  30718 aaataccctctaaataagatagggtaatctagaaaaaa 30755  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 94715 - 94748
Alignment:
Q  20 gtaaataccctctaaacaagagagggtaatctag 53  Q
    |||||||||||||||||||||||| |||||||||    
T  94715 gtaaataccctctaaacaagagagagtaatctag 94748  T

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