View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_12 (Length: 324)
Name: NF16066_low_12
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 8542304 - 8542594
Alignment:
| Q |
11 |
aagaaacaaaaagttaggggacaaaaactgcatttatacattaagtaaagaaacacggtcacatttttgaaacaaatgaaaacttgatttaatagataac |
110 |
Q |
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| T |
8542304 |
aagaaacaaaaagttaggggacaaaaactgcatttatactttaagtaaagaaacacggtcacatttttgaaacaaatgaaaacttgatttaatagataac |
8542403 |
T |
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| Q |
111 |
aagcaatctaagaaatgctgatagcttcctacttagcatttaatcaaatctcaatgaagttccagaatttcacaaatattttccacatgtagtattcaat |
210 |
Q |
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| T |
8542404 |
aagcaatctaagaaatgttgatagcttcctacttagcatttaatcaaatctcaatgaagttccagaatttcacaaatatgttccacatgtagtattcaat |
8542503 |
T |
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| Q |
211 |
cgaacaagcaatattcttataaagcaagatcattgatccaaagttcaaagttaatcagttaatcgttgatccaaagttcaaagtttataaa |
301 |
Q |
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| T |
8542504 |
cgaacaagcaatattcttataaagcaagatcattgatccaaagttcaaagttaatcagttaatcgttgatccaaagttcaaagtttataaa |
8542594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 8512439 - 8512142
Alignment:
| Q |
6 |
gtgagaagaaacaaaaagttaggggacaaaaactgcatttatacattaagtaaagaaacacggtcacatttttgaaacaaatgaaaacttgatttaatag |
105 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
8512439 |
gtgaaaagaaacaaaaagttagggaacaaaaactgcatttatactttaagtaaaggaacacgaccacattttc-aaacacatgaaaacttgatttaatag |
8512341 |
T |
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| Q |
106 |
ataacaagcaatctaagaaatgctgatagcttcctacttagcatttaatcaaatctcaatgaagttccagaatttcacaaatattttccacatgtagtat |
205 |
Q |
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| T |
8512340 |
ataacaagcaatctaagaaatgctgatagcttcctacttaacatttaatcaaatatcaatgaagttccagaatttcacaaatatgttcctca-atagtag |
8512242 |
T |
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| Q |
206 |
tcaatcgaacaagcaatattct----tataaagcaagatcattgatccaaagttcaaagttaatcagttaatcgttgatccaaagttcaaagtttataaa |
301 |
Q |
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| T |
8512241 |
tcaatcgaacaagcaattttcttacatataaagcaagatccttgatccaaagttcaaagttaatcagttaatccttgatccaaagttcaaagtttataaa |
8512142 |
T |
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