View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_13 (Length: 283)
Name: NF16066_low_13
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 37440376 - 37440453
Alignment:
| Q |
74 |
aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttcagcc |
151 |
Q |
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| T |
37440376 |
aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttcagcc |
37440453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 37226757 - 37226867
Alignment:
| Q |
37 |
acacaataccaactgttgatagtgtcgaagcctctcaaagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttct |
136 |
Q |
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| T |
37226757 |
acacaatactaagcgttgatagtgtccaagtctatacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttct |
37226856 |
T |
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| Q |
137 |
gtacgagcttc |
147 |
Q |
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| T |
37226857 |
ctacaagcttc |
37226867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 37221321 - 37221394
Alignment:
| Q |
74 |
aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttc |
147 |
Q |
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| T |
37221321 |
aagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc |
37221394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 37387133 - 37387066
Alignment:
| Q |
81 |
aatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttca |
148 |
Q |
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| T |
37387133 |
aatgttccattcccttgtgattgcattaatgacgagtttcttggtcacacgtttttgtacgagtttca |
37387066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 37326448 - 37326374
Alignment:
| Q |
153 |
attcaggttgaaattcataagacatttttcaaatcaattcgaatctt-ctatgaatcgtaaaatgattaccaata |
226 |
Q |
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| T |
37326448 |
attcaggttgtaactcataagacattttttaaatcaatttaaatcttactatgaatcataaaatgattaccaata |
37326374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 37326321 - 37326280
Alignment:
| Q |
229 |
catatacgaacatcaaaatgattcaagattcaaatcataaat |
270 |
Q |
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| T |
37326321 |
catatacgaacatcaaaatgattcaagattcaaatcataaat |
37326280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 37195845 - 37195895
Alignment:
| Q |
74 |
aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttgg |
124 |
Q |
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| T |
37195845 |
aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg |
37195895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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