View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_15 (Length: 262)
Name: NF16066_low_15
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 27824797 - 27824565
Alignment:
| Q |
16 |
aaaaacatacaaatacatcactctaaaatagataaagctatatatattaacttacatgtttgtcaatgtaatctccccaaaacttggcttgggatcgctt |
115 |
Q |
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| T |
27824797 |
aaaaacatacaaatacatcactctaaaatagataaagctatatat--taacttacatgtttgtcaatgtaatctccccaaaacttagcttgtgatcgctt |
27824700 |
T |
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| Q |
116 |
gtaagggtctaagggcaaaagagaaggtttttggttccaagcttcatcaatgtattcaactatattaagtgattcacatataggttttccattatgaacc |
215 |
Q |
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| T |
27824699 |
gtaagggtctaagggcaaaagagaaggtttgtgattccaagcttcatcaatgtattcaactatattaagtgattcacatataggttttccattatgaacc |
27824600 |
T |
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| Q |
216 |
aaaaccggtatcattttgtaaaccgggttcatctc |
250 |
Q |
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| T |
27824599 |
aaaaccggtatcattttgtaaaccgggttcatctc |
27824565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 27821772 - 27821585
Alignment:
| Q |
63 |
taacttacatgtttgtcaatgtaatctccccaaaacttggcttgggatcgcttgtaagggtctaagggcaaaagagaaggtttttggttccaagcttcat |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27821772 |
taacttacatgtttgtcaatgtaatctccccaaaacttggcttgtgatcgtttgtaagggtccgagggcaaaagagaaggtttttggttccaagcttcat |
27821673 |
T |
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| Q |
163 |
caatgtattcaactatattaagtgattcacatataggttttccattatgaaccaaaaccggtatcattttgtaaaccgggttcatctc |
250 |
Q |
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| T |
27821672 |
caatgtactcaactatattaagtgattcacatataggttttccattatgaaccaaaaccggtatcattttgtaaaccgggttcatctc |
27821585 |
T |
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