View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16066_low_16 (Length: 236)
Name: NF16066_low_16
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 11137679 - 11137887
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11137679 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtgctgataccattagcattgtcaaca |
11137778 |
T |
|
| Q |
115 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgcgatgattaaaatgggtaatattggtgtactgaccgggaaaaaaggagagattag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11137779 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattag |
11137878 |
T |
|
| Q |
215 |
aaaacattg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
11137879 |
aaaacattg |
11137887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 11156621 - 11156826
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| ||||| || ||||| |||||| | ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11156621 |
aagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtgcagataccattagcattgtcaaca |
11156720 |
T |
|
| Q |
115 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgcgatgattaaaatgggtaatattggtgtactgaccgggaaaaaaggagagattag |
214 |
Q |
| |
|
| ||||| | || |||| ||||||||||| |||||| | || || |||||||||||||| ||||||||||| || || |||| |||||||||||||| |
|
|
| T |
11156721 |
aattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattag |
11156820 |
T |
|
| Q |
215 |
aaaaca |
220 |
Q |
| |
|
|||||| |
|
|
| T |
11156821 |
aaaaca |
11156826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 11145984 - 11146189
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
|||||||| ||||| |||||||| | ||||| ||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11145984 |
aagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtgctgataccattagcattgtcaaca |
11146083 |
T |
|
| Q |
115 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgcgatgattaaaatgggtaatattggtgtactgaccgggaaaaaaggagagattag |
214 |
Q |
| |
|
| || |||| |||| ||||| ||||| |||||| | || || |||||||||||||| ||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
11146084 |
actttgccactgatcaaaaagctttttttgagagctttaaggctgctatgattaaaatgggaaatattggtgtgttaaccgggaaccaaggagagattag |
11146183 |
T |
|
| Q |
215 |
aaaaca |
220 |
Q |
| |
|
|||||| |
|
|
| T |
11146184 |
aaaaca |
11146189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 11149953 - 11150158
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
|||||||| ||||| |||||||| | |||||||||||||| || ||||| |||||| | ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
11149953 |
aagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggttcagataccattagcattgtcaaca |
11150052 |
T |
|
| Q |
115 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgcgatgattaaaatgggtaatattggtgtactgaccgggaaaaaaggagagattag |
214 |
Q |
| |
|
| || | || |||| ||||| ||||| |||||| | || || ||||| |||||||| ||||||||||| | || |||||| ||||||||||||| |
|
|
| T |
11150053 |
aatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgttaactgggaaacaaggagagattag |
11150152 |
T |
|
| Q |
215 |
aaaaca |
220 |
Q |
| |
|
|||||| |
|
|
| T |
11150153 |
aaaaca |
11150158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 11119140 - 11119240
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
11119140 |
aagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaaca |
11119239 |
T |
|
| Q |
115 |
a |
115 |
Q |
| |
|
| |
|
|
| T |
11119240 |
a |
11119240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 11111369 - 11111468
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
11111369 |
aagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtgcagataccattagcattgtcaaca |
11111468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 11190920 - 11190837
Alignment:
| Q |
18 |
aactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccatt |
101 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||| |||||||||| ||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
11190920 |
aactactactccaatcttcaagctggaaatggtttgtttcagagtgatcaagagcttttttccacacctggtgctgataccatt |
11190837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 10793425 - 10793232
Alignment:
| Q |
15 |
aagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcaacatctggtgctgataccattagcattgtcaaca |
114 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||| | || |||||| | ||| ||||||| ||||||||| || | |
|
|
| T |
10793425 |
aagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatgcagataccactagcattgttaata |
10793326 |
T |
|
| Q |
115 |
agttcagtgctgacaaaaatgctttctttgatagctttgaagccgcgatgattaaaatgggtaatattggtgtactgaccgggaaaaaaggaga |
208 |
Q |
| |
|
| || | || ||| |||||||||||| |||||| | || |||||||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
10793325 |
actttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgcttaccggaaagaaaggaga |
10793232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 11111516 - 11111574
Alignment:
| Q |
162 |
atgattaaaatgggtaatattggtgtactgaccgggaaaaaaggagagattagaaaaca |
220 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| || |||||||| ||||||||||| |
|
|
| T |
11111516 |
atgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaaca |
11111574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University