View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_18 (Length: 232)
Name: NF16066_low_18
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 7482550 - 7482349
Alignment:
| Q |
15 |
cacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattg |
114 |
Q |
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| T |
7482550 |
cacattttttcacaatttccttgccaactgacacaaattcctcattctcctgttctttgtcattctcaaaagctaattgactaaataatctccaagattg |
7482451 |
T |
|
| Q |
115 |
tttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttccttttgct |
214 |
Q |
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||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7482450 |
tttttcatccagaccctttaaattgaagatagaagatgtaccacttgccttggcaaccttctcacttcttgcggtgataattattttacttccttttgct |
7482351 |
T |
|
| Q |
215 |
cc |
216 |
Q |
| |
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|| |
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|
| T |
7482350 |
cc |
7482349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 7128589 - 7128782
Alignment:
| Q |
16 |
acatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattgt |
115 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||||||||| |
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| T |
7128589 |
acattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgtcattctcaaaagctaattgactaaataatgtccaagattgt |
7128688 |
T |
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| Q |
116 |
ttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
209 |
Q |
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| T |
7128689 |
ttttcactgagaccctttaaaaacaagatagaagatgaaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
7128782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 7721863 - 7722056
Alignment:
| Q |
16 |
acatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattgt |
115 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||| ||||| ||||||| ||||||| | |
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| T |
7721863 |
acattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgaaattctcaaaagttaactgactatataatctccaagattct |
7721962 |
T |
|
| Q |
116 |
ttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
209 |
Q |
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||||||||||| |||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7721963 |
ttttcatcgagtccctttaaattgaagatagaagatggaccacttgccttggcaaccttctcacttcttgcggtgataattattttacttcctt |
7722056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 7528669 - 7528475
Alignment:
| Q |
15 |
cacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattg |
114 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| | |||||||| |
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| T |
7528669 |
cacattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgtcattctcaaaagctaattgactaaataatgtccaagattg |
7528570 |
T |
|
| Q |
115 |
tttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
209 |
Q |
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||||||| |||||||| ||| | | ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7528569 |
tttttcactgagacccttcaaaaacaagatagaagatgaaccacttgccttggcaaccatctcacttcttgcggtgataattattttacttcctt |
7528475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 7520618 - 7520425
Alignment:
| Q |
16 |
acatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattgt |
115 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||| ||||||||||| | ||||||||| |
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| T |
7520618 |
acatttcttcacaatttccttgccaattgacaccaattcctcattctctagttctctctcattctcaaaagctaattgactaaataatgtccaagattgt |
7520519 |
T |
|
| Q |
116 |
ttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
209 |
Q |
| |
|
|||||| ||||||||| |||| | | | |||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7520518 |
ttttcaccgagaccctgtaaaaacaaggtgaaagaagaaccacttgccttggcaaccatctcacttcttgcggtgataattattttacttcctt |
7520425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 7494951 - 7494758
Alignment:
| Q |
16 |
acatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaagattgt |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||| ||||||||||| | ||||||||| |
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| T |
7494951 |
acatttcttcacaatttccttgccaattgacaccaattcctcattctctagttctctctcattctcaaaagctaattgactaaataatgtccaagattgt |
7494852 |
T |
|
| Q |
116 |
ttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttctcacttcttgtggtgataattattttacttcctt |
209 |
Q |
| |
|
|||||| ||||||||| ||| | | | |||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7494851 |
ttttcaccgagaccctgtaagaacaaggtgaaagaagaaccacttgccttggcaaccatctcacttcttgcggtgataattattttacttcctt |
7494758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 16749929 - 16750071
Alignment:
| Q |
75 |
gattctcaaaagctaatcgactaaataatctacaagattgtttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaacctt |
174 |
Q |
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||||||||||||||||| |||| || || | ||||||||||||||||| ||||||| |||| || | |||||||| |||||| |||||| ||| | |
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| T |
16749929 |
gattctcaaaagctaattgactgaacaaattccaagattgtttttcatcaagaccctttaaagagaagagggaagatgttccacttatcttggccaccgt |
16750028 |
T |
|
| Q |
175 |
ctcacttcttgtggtgataattattttacttccttttgctcca |
217 |
Q |
| |
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||| || ||||| || || | ||||||||||||||||||||| |
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| T |
16750029 |
ctcgctccttgtagttatgacaattttacttccttttgctcca |
16750071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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