View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16066_low_2 (Length: 781)

Name: NF16066_low_2
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16066_low_2
NF16066_low_2
[»] chr7 (22 HSPs)
chr7 (433-762)||(6350185-6350514)
chr7 (15-288)||(6350621-6350898)
chr7 (419-564)||(33387490-33387637)
chr7 (427-557)||(7003524-7003653)
chr7 (427-557)||(7049395-7049524)
chr7 (488-564)||(13072043-13072119)
chr7 (468-564)||(21420055-21420151)
chr7 (445-564)||(32198872-32198991)
chr7 (431-495)||(36659070-36659134)
chr7 (428-504)||(44832729-44832805)
chr7 (428-476)||(49010640-49010688)
chr7 (444-511)||(23581250-23581317)
chr7 (429-511)||(23090231-23090313)
chr7 (428-510)||(28836988-28837070)
chr7 (456-564)||(8722525-8722633)
chr7 (427-486)||(8866941-8867000)
chr7 (437-511)||(31251965-31252039)
chr7 (475-521)||(48614137-48614183)
chr7 (462-511)||(553569-553618)
chr7 (489-566)||(8867640-8867717)
chr7 (428-509)||(33386831-33386911)
chr7 (489-566)||(33685745-33685822)
[»] chr2 (16 HSPs)
chr2 (102-207)||(35081986-35082093)
chr2 (19-78)||(35084185-35084244)
chr2 (444-564)||(21556283-21556403)
chr2 (446-529)||(18829074-18829157)
chr2 (428-511)||(37621905-37621988)
chr2 (427-533)||(15441489-15441595)
chr2 (462-564)||(18829830-18829932)
chr2 (419-564)||(17373669-17373814)
chr2 (427-487)||(7071742-7071802)
chr2 (427-495)||(17444236-17444303)
chr2 (427-495)||(26161903-26161970)
chr2 (489-560)||(26238130-26238201)
chr2 (445-504)||(26591296-26591355)
chr2 (427-469)||(12756065-12756107)
chr2 (427-564)||(15512385-15512522)
chr2 (461-534)||(40654140-40654213)
[»] chr5 (8 HSPs)
chr5 (427-564)||(23034862-23034998)
chr5 (427-564)||(30297107-30297242)
chr5 (427-495)||(15959146-15959214)
chr5 (430-505)||(8788726-8788801)
chr5 (445-503)||(20368293-20368351)
chr5 (428-564)||(8788018-8788156)
chr5 (427-486)||(12278065-12278124)
chr5 (444-503)||(20362932-20362991)
[»] chr4 (24 HSPs)
chr4 (444-566)||(20628655-20628777)
chr4 (428-564)||(20635493-20635629)
chr4 (442-564)||(2941386-2941508)
chr4 (442-564)||(3222232-3222354)
chr4 (444-542)||(5290651-5290749)
chr4 (443-505)||(33846480-33846542)
chr4 (427-557)||(26546456-26546588)
chr4 (427-495)||(13390648-13390716)
chr4 (461-557)||(31854155-31854250)
chr4 (427-486)||(28876524-28876583)
chr4 (461-511)||(13502487-13502537)
chr4 (427-564)||(9415797-9415932)
chr4 (427-495)||(34406484-34406551)
chr4 (427-495)||(44157522-44157590)
chr4 (489-564)||(3292805-3292880)
chr4 (427-486)||(30215956-30216015)
chr4 (427-486)||(33135654-33135713)
chr4 (425-484)||(56226192-56226251)
chr4 (428-486)||(42332983-42333041)
chr4 (427-481)||(50204302-50204356)
chr4 (468-564)||(15742705-15742799)
chr4 (471-564)||(29094332-29094425)
chr4 (489-566)||(42333685-42333762)
chr4 (515-564)||(56226267-56226316)
[»] chr8 (9 HSPs)
chr8 (428-564)||(33947257-33947393)
chr8 (427-495)||(3436131-3436199)
chr8 (427-557)||(9878118-9878247)
chr8 (445-504)||(15863523-15863582)
chr8 (427-476)||(32539693-32539742)
chr8 (471-564)||(33532980-33533073)
chr8 (177-217)||(6290214-6290254)
chr8 (428-564)||(33947628-33947763)
chr8 (428-527)||(40401350-40401449)
[»] chr3 (14 HSPs)
chr3 (146-217)||(11021744-11021815)
chr3 (445-509)||(19814987-19815052)
chr3 (418-510)||(10842491-10842583)
chr3 (437-564)||(5177104-5177231)
chr3 (429-560)||(38415649-38415783)
chr3 (427-485)||(5136191-5136249)
chr3 (428-486)||(11017480-11017538)
chr3 (453-542)||(8257706-8257795)
chr3 (449-564)||(219475-219590)
chr3 (430-564)||(16094283-16094418)
chr3 (461-511)||(218796-218846)
chr3 (429-495)||(27936081-27936147)
chr3 (427-476)||(29564382-29564431)
chr3 (445-486)||(35938141-35938182)
[»] chr1 (8 HSPs)
chr1 (419-543)||(17458081-17458204)
chr1 (427-495)||(17446191-17446259)
chr1 (427-495)||(41971457-41971525)
chr1 (428-495)||(15209490-15209557)
chr1 (429-495)||(3829883-3829949)
chr1 (445-564)||(17745041-17745162)
chr1 (448-563)||(9901855-9901968)
chr1 (517-563)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (437-564)||(18213-18340)
[»] chr6 (4 HSPs)
chr6 (418-533)||(16793782-16793897)
chr6 (429-564)||(23217804-23217939)
chr6 (464-542)||(28932958-28933036)
chr6 (489-564)||(28996913-28996988)
[»] scaffold0154 (1 HSPs)
scaffold0154 (427-495)||(32113-32181)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 433 - 762
Target Start/End: Complemental strand, 6350514 - 6350185
Alignment:
Q  433 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T
Q  533 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagag 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350414 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagag 6350315  T
Q  633 gtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattc 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350314 gtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattc 6350215  T
Q  733 ttcaatttgttgcaaagatcaaacaagcac 762  Q
    ||||||||||||||||||||||||||||||    
T  6350214 ttcaatttgttgcaaagatcaaacaagcac 6350185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 6350898 - 6350621
Alignment:
Q  15 atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactctatcataa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||| ||||||||||||||||||||||||||    
T  6350898 atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactctatcataa 6350799  T
Q  113 ctctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat 210  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350798 ctctctctaactgccataacagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat 6350699  T
Q  211 tcttaacggttacaacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt 288  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6350698 tcttaacggttacaacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt 6350621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 33387490 - 33387637
Alignment:
Q  419 tctagttcgcttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagag 516  Q
    ||||| ||||| |||||||| || | ||||||| ||||||| ||||   | || |||||||||||||| | ||| ||||||||||||| |||||| ||      
T  33387490 tctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtgttttttattttatagga 33387589  T
Q  517 tcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387590 tcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 557
Target Start/End: Original strand, 7003524 - 7003653
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 525  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7003524 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7003621  T
Q  526 agacttcgtgtatattatagagtcaatttcaa 557  Q
    |||||||  |||||||| |  |||||||||||    
T  7003622 agacttcacgtatattacatggtcaatttcaa 7003653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 557
Target Start/End: Original strand, 7049395 - 7049524
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 525  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7049395 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7049492  T
Q  526 agacttcgtgtatattatagagtcaatttcaa 557  Q
    |||||||  |||||||| |  |||||||||||    
T  7049493 agacttcacgtatattacatggtcaatttcaa 7049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  488 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 564
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  468 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 564
Target Start/End: Complemental strand, 32198991 - 32198872
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattat 543  Q
    ||||||| |||| || |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | ||||||||     
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattac 32198893  T
Q  544 agagtcaatttcaacaattaa 564  Q
    |  |||||||| || ||||||    
T  32198892 aaggtcaatttaaataattaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 36659070 - 36659134
Alignment:
Q  431 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 44832729 - 44832805
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 504  Q
    ||||||||||||| |  ||  ||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832729 cttttttggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 476
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctc 476  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 444 - 511
Target Start/End: Complemental strand, 23581317 - 23581250
Alignment:
Q  444 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    |||||||||||||| | || ||| |||| |||||||||||| | ||||||||||| ||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaatttta 23581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 511
Target Start/End: Original strand, 23090231 - 23090313
Alignment:
Q  429 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    ||||||||||||||  ||||||| ||||||  ||||||||| ||| | |||||||| | ||| ||||||||||||| ||||||    
T  23090231 ttttttggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttatttta 23090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 510
Target Start/End: Complemental strand, 28837070 - 28836988
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 510  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| || ||||||| ||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaataacaaggttaaaatttgcgtttttattttt 28836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 564
Target Start/End: Complemental strand, 8722633 - 8722525
Alignment:
Q  456 gtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttc 555  Q
    ||||||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||    
T  8722633 gtcataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttc 8722534  T
Q  556 aacaattaa 564  Q
    || ||||||    
T  8722533 aataattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 8867000 - 8866941
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| ||| || |||||||||    
T  8867000 gcttttttggacttcacgtatattacaaggttataaataataaaaatttcgaattacatg 8866941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 511
Target Start/End: Complemental strand, 31252039 - 31251965
Alignment:
Q  437 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    ||||| ||||||||| | ||| | | ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252039 actttgcgtatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 521
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  475 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 521  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  462 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 566
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 566  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 509
Target Start/End: Complemental strand, 33386911 - 33386831
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattt 509  Q
    ||||||||||||   | ||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||| ||||||| ||||    
T  33386911 cttttttggactacgcatatattagagggtca-aaacaaaaagaatctcaaattacatgattaaaatatatgttttttattt 33386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 566  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
Q  102 ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct 199  Q
    ||||||||||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35082093 ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct 35081994  T
Q  200 tcttcttc 207  Q
    ||||||||    
T  35081993 tcttcttc 35081986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 35084244 - 35084185
Alignment:
Q  19 agagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc 78  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  35084244 agagaatagaagagagaaaattcattatttcactaaccgagtttgttacaatggttaagc 35084185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 444 - 564
Target Start/End: Complemental strand, 21556403 - 21556283
Alignment:
Q  444 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 543  Q
    |||||||||||||||| |||| | ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| |||     
T  21556403 gtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaa 21556304  T
Q  544 agagtcaatttcaacaattaa 564  Q
    |  |||| ||| |||||||||    
T  21556303 atggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 446 - 529
Target Start/End: Complemental strand, 18829157 - 18829074
Alignment:
Q  446 atattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 529  Q
    |||||||||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 37621905 - 37621988
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||||||| ||| ||||| | ||||| ||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttatttta 37621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 533
Target Start/End: Complemental strand, 15441595 - 15441489
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 526  Q
    |||||||||||||| |  ||||||| | ||| | ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| ||||    
T  15441595 gcttttttggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttca 15441496  T
Q  527 gacttcg 533  Q
    |||||||    
T  15441495 gacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  462 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 561  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  562 taa 564  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 17373669 - 17373814
Alignment:
Q  419 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtc 518  Q
    ||||| || ||||||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||   ||||||||| | ||||| |||||| |  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  519 attgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||| ||||||| | | |||| ||| ||  ||||||| |||||||||    
T  17373769 atttttcagacattgggtattttacaggctcaatttaaacaattaa 17373814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 7071802 - 7071742
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgt 487  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| ||||||||| |||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaactacatgt 7071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 17444303 - 17444236
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    |||||||||||||| |||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  17444303 gcttttttggacttcacgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 17444236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 26161970 - 26161903
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  26161970 gcttttttggacttcgcgtatattacagggt-ataaataataaaaatctcgaattacatggtcagaata 26161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 560
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 560  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 26591355 - 26591296
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 504  Q
    ||||||||||||||| |||||| |||||| | |||||||||| |||||||| || |||||    
T  26591355 tatattatagggtcaaaaataagaagaatatgaaattacatggttagaataagtattttt 26591296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataa 469  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 15512385 - 15512522
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 526  Q
    |||||||||||||| |  ||||||| || |  | ||||||||| ||||||||||||||   ||||||||| ||||||| |||||  ||  ||||| ||||    
T  15512385 gcttttttggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttca 15512484  T
Q  527 gacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    || ||| | ||||||  |  ||||||||||| ||||||    
T  15512485 gatttcatatatattgcatggtcaatttcaataattaa 15512522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  461 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 534  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 23034862 - 23034998
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 526  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| | | ||||||| ||||| |||||| ||||||||| ||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgtattttt-attttacagagtcatttttca 23034960  T
Q  527 gacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||||||||||| ||  |||||||||| ||||||    
T  23034961 gacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 564
Target Start/End: Complemental strand, 30297242 - 30297107
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 526  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || |    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttga 30297144  T
Q  527 gacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||| ||||||| |  ||||||||||| ||||||    
T  30297143 gacttcgtttatattaca-tgtcaatttcaataattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 15959214 - 15959146
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacatgttcagaata 15959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 8788726 - 8788801
Alignment:
Q  430 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 505  Q
    |||||||||||||  |||||||||| || | ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 503
Target Start/End: Complemental strand, 20368351 - 20368293
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 503  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  20368351 tatattatatggtcaaaaataagaagaatctcaaattacaagtttaaaatatgtctttt 20368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 564
Target Start/End: Complemental strand, 8788156 - 8788018
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttc 525  Q
    |||||||||||   |||||||||||||||||| |||||  | || ||||||||||||||   ||||||||| ||||||| |||||| || || ||| |||    
T  8788156 cttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttc 8788057  T
Q  526 agacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||   |||  ||| ||| || |||||||| |||||||||    
T  8788056 aggtatcgcatattttacagtgtcaatttaaacaattaa 8788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 12278124 - 12278065
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    |||||||||||||| | |||||||| ||||| ||||||||||| ||| || |||||||||    
T  12278124 gcttttttggacttcatgtatattacagggttataaataataaaaatttcgaattacatg 12278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 20362991 - 20362932
Alignment:
Q  444 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 503  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||| ||||    
T  20362991 gtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtctttt 20362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 444 - 566
Target Start/End: Complemental strand, 20628777 - 20628655
Alignment:
Q  444 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 543  Q
    |||||||| ||||| | ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  ||||||||     
T  20628777 gtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattac 20628678  T
Q  544 agagtcaatttcaacaattaatc 566  Q
    || ||||||||||||||| ||||    
T  20628677 agggtcaatttcaacaatcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 428 - 564
Target Start/End: Complemental strand, 20635629 - 20635493
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 527  Q
    ||||||||||||| | ||| |||||||||| | ||||||| ||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| || ||    
T  20635629 cttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgag 20635530  T
Q  528 acttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    | ||| | ||||||  |  |||||||| |||||||||    
T  20635529 atttcatatatattgcaaggtcaatttaaacaattaa 20635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 564
Target Start/End: Original strand, 2941386 - 2941508
Alignment:
Q  442 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 541  Q
    |||| ||||||||||||| |||||  |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||    
T  2941386 acgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatatt 2941485  T
Q  542 atagagtcaatttcaacaattaa 564  Q
    | |   |||||||||||||||||    
T  2941486 acaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 564
Target Start/End: Original strand, 3222232 - 3222354
Alignment:
Q  442 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 541  Q
    |||||||||||||||||| |||||| ||||||||||||| |||   ||||||||||| ||||| |||||| ||  | ||| |||| || | |||||| ||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtatttt 3222331  T
Q  542 atagagtcaatttcaacaattaa 564  Q
    |  | |||||||| |||||||||    
T  3222332 acggggtcaatttaaacaattaa 3222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 542
Target Start/End: Complemental strand, 5290749 - 5290651
Alignment:
Q  444 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 542  Q
    |||||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290749 gtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 33846480 - 33846542
Alignment:
Q  443 cgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 505  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846480 cgtatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 427 - 557
Target Start/End: Complemental strand, 26546588 - 26546456
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatg--tgtttttaattttaaagagtcattgtt 524  Q
    |||||||||||||| |  ||||||| ||||||  ||||||||||||||||||||||||   ||||||| ||  | ||||| |||||| ||||| | | ||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaatttt 26546489  T
Q  525 cagacttcgtgtatattatagagtcaatttcaa 557  Q
    |||||||||  ||||||| ||  ||||||||||    
T  26546488 cagacttcgcatatattacaggatcaatttcaa 26546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 13390716 - 13390648
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 13390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 557
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  461 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 557  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 28876583 - 28876524
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||||||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatg 28876524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  461 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 9415797 - 9415932
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 526  Q
    |||||||||||||| |  |||| || ||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || | ||||  | || ||| ||||    
T  9415797 gcttttttggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttca 9415894  T
Q  527 gacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||  ||||||| || ||||||||||| ||||||    
T  9415895 gacttcgcatatattacagggtcaatttcaataattaa 9415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 34406551 - 34406484
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34406551 gcttttttggactttgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 44157522 - 44157590
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattgcatggtcagaata 44157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 564
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 30216015 - 30215956
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  30216015 gcttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 30215956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 33135713 - 33135654
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| |||||||||    
T  33135713 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatg 33135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 56226192 - 56226251
Alignment:
Q  425 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattaca 484  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| ||||||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaattaca 56226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 42333041 - 42332983
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    |||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  42333041 cttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 42332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 481  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 564
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  468 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 564
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  471 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 566
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 566  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  515 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 428 - 564
Target Start/End: Complemental strand, 33947393 - 33947257
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 527  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcag 33947294  T
Q  528 acttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||||||  ||||||| |  |||||||| |||||||||    
T  33947293 acttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 3436131 - 3436199
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaattacatgtttaaaata 3436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 557
Target Start/End: Original strand, 9878118 - 9878247
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 525  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||  |||| |||||  ||| || |||| | |||    
T  9878118 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaatacatgttatttaa--ttacagggtcaattttc 9878215  T
Q  526 agacttcgtgtatattatagagtcaatttcaa 557  Q
    ||||||| ||||||||| |  |||||||||||    
T  9878216 agacttcatgtatattacatggtcaatttcaa 9878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 15863523 - 15863582
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 504  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| |||||    
T  15863523 tatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtattttt 15863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctc 476  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 564
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  471 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
Q  177 cttgcttctcaagtaatctttcttcttcttccattcttaac 217  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  6290214 cttgctcctcaagtaatcttccttcttcttccattcttaac 6290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 33947628 - 33947763
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 527  Q
    |||||||||||||  |||| |||| ||||||| |||||| | |||| |||||||||| | ||| ||||| |||||||| ||||| |  |||||| |||||    
T  33947628 cttttttggacttagcgtacattagagggtcaaaaataagatgaatttcaaattacagggttaaaatatatgtttttatttttacatggtcatt-ttcag 33947726  T
Q  528 acttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    ||||   |||||||| |  |||||||| || ||||||    
T  33947727 actttacgtatattacattgtcaatttgaataattaa 33947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 527
Target Start/End: Original strand, 40401350 - 40401449
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 527  Q
    ||||||||||||   | ||||||||||||| | |||||| |||||| |||| ||||| | |||||||||| ||| || ||||| ||| |||||| |||||    
T  40401350 cttttttggactacgcatatattatagggttaaaaataagaagaatatcaatttacaagattagaatatgcgttatttattttcaagtgtcatttttcag 40401449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
Q  146 gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac 217  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||    
T  11021744 gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac 11021815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 19814987 - 19815052
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 509  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 10842491 - 10842583
Alignment:
Q  418 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 510  Q
    |||||| |||| ||| ||||| | || ||||||| |||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842491 atctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 437 - 564
Target Start/End: Complemental strand, 5177231 - 5177104
Alignment:
Q  437 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 536  Q
    |||| |||||||||| | ||| | |||| | || ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| |||    
T  5177231 acttcacgtatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgt 5177132  T
Q  537 atattatagagtcaatttcaacaattaa 564  Q
     ||||| |  |||||||| |||||||||    
T  5177131 ttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 560
Target Start/End: Original strand, 38415649 - 38415783
Alignment:
Q  429 ttttttggactttacgtatattatagggtcataaa-taataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttc 525  Q
    |||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| |||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  526 agacttcgtgtatattatagagtcaatttcaacaa 560  Q
    |||| || ||||||||| || |||||||| |||||    
T  38415749 agacatcatgtatattacagcgtcaatttgaacaa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 485
Target Start/End: Original strand, 5136191 - 5136249
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacat 485  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacat 5136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 11017538 - 11017480
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 486  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataaaaatttcgaattacatg 11017480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 453 - 542
Target Start/End: Original strand, 8257706 - 8257795
Alignment:
Q  453 agggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 542  Q
    |||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257706 agggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 564
Target Start/End: Original strand, 219475 - 219590
Alignment:
Q  449 ttatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagt 548  Q
    |||||| |||| |||||| |||||| ||||||| || | ||| ||||| | ||||| |||||| |  |||||| ||||||| ||  |||| ||| |||||    
T  219475 ttatagagtcaaaaataagaagaatttcaaattgcaaggttaaaatatctattttttattttacaatgtcatttttcagacatcacgtattttacagagt 219574  T
Q  549 caatttcaacaattaa 564  Q
    |||||| |||||||||    
T  219575 caatttaaacaattaa 219590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 564
Target Start/End: Complemental strand, 16094418 - 16094283
Alignment:
Q  430 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattttaaagagtcattgttcaga 528  Q
    ||||||||||| |  ||||||| ||||  | |||| ||||| ||||||||||||| | ||| |||||||  ||||| |||||| || |||| | ||||||    
T  16094418 tttttggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcaga 16094319  T
Q  529 cttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||  |||||||  | ||||||||||| ||||||    
T  16094318 cttcgcatatattactgggtcaatttcaataattaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  461 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 511  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 27936081 - 27936147
Alignment:
Q  429 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||  ||||||||| ||||| |||||||||||  ||||||||| ||||| | ||||||    
T  27936081 ttttttggacttcgcgtatattacagggttataaataataaatatctcaaatcacatggtcagaata 27936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctc 476  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 35938141 - 35938182
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatg 486  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  35938141 tatattatggggtcaaaaataataagaatcttaaattacatg 35938182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 543
Target Start/End: Original strand, 17458081 - 17458204
Alignment:
Q  419 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagt 517  Q
    ||||| || ||||| |||||||  | |||||||||| |||| |||||| ||||||||||||||||| |  ||||||||||||||||| ||| | |||| |    
T  17458081 tctaggtcacttttatggacttcgcatatattatagcgtcaaaaataagaagaatctcaaattaca-gagtagaatatgtgtttttattttaacaaga-t 17458178  T
Q  518 cattgttcagacttcgtgtatattat 543  Q
    |||| ||||||||  |||||||||||    
T  17458179 catttttcagactaagtgtatattat 17458204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 17446191 - 17446259
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 17446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 41971525 - 41971457
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||||| ||||||||| ||||||    
T  41971525 gcttttttggacttcgcgtatattacagggctataaataataaaaatctcaagttacatgttcagaata 41971457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 495
Target Start/End: Complemental strand, 15209557 - 15209490
Alignment:
Q  428 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    |||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||||| ||||||    
T  15209557 cttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatgttcagaata 15209490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 3829883 - 3829949
Alignment:
Q  429 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 3829949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 564
Target Start/End: Original strand, 17745041 - 17745162
Alignment:
Q  445 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatatta 542  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  |||||||    
T  17745041 tatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatatta 17745140  T
Q  543 tagagtcaatttcaacaattaa 564  Q
     |  |||||| |||| ||||||    
T  17745141 catggtcaatgtcaataattaa 17745162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 563
Target Start/End: Original strand, 9901855 - 9901968
Alignment:
Q  448 attatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagag 547  Q
    |||||||||||| |||||| |||||| | |||||||||| |||||  |||||||||| |||||| ||  | ||| |||| || ||| || ||||| ||||    
T  9901855 attatagggtcaaaaataagaagaatataaaattacatggttaga--atgtgttttttattttataggattatttttcaaacatcgcgtgtattacagag 9901952  T
Q  548 tcaatttcaacaatta 563  Q
    | ||||| ||||||||    
T  9901953 ttaatttgaacaatta 9901968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 563
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  517 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 563  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 437 - 564
Target Start/End: Original strand, 18213 - 18340
Alignment:
Q  437 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 536  Q
    |||| ||| |||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| ||||  ||||||  | ||||||  ||| ||||||  |    
T  18213 acttcacgaatattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgctt 18312  T
Q  537 atattatagagtcaatttcaacaattaa 564  Q
    |||||| ||  |||||||||| ||||||    
T  18313 atattacaggatcaatttcaataattaa 18340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 418 - 533
Target Start/End: Complemental strand, 16793897 - 16793782
Alignment:
Q  418 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagt 517  Q
    |||||| ||| |||| ||||||||  |||||||| | ||| | ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| |||||    
T  16793897 atctaggtcgtttttctggactttgtgtatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagt 16793798  T
Q  518 cattgttcagacttcg 533  Q
     ||| |||||||||||    
T  16793797 aatttttcagacttcg 16793782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 429 - 564
Target Start/End: Original strand, 23217804 - 23217939
Alignment:
Q  429 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcaga 528  Q
    |||||||||||| ||| |||||| |  |||||||||||||||||| |  | ||||| | ||||||||||||||||  ||||||    |||||| ||||||    
T  23217804 ttttttggacttcacgaatattacaaagtcataaataataagaatattgagttacagggttagaatatgtgttttatattttactaggtcatttttcaga 23217903  T
Q  529 cttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    | ||   ||||||| || ||||||||||| ||||||    
T  23217904 catcacttatattacagggtcaatttcaataattaa 23217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  464 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 542  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  489 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 564  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 32113 - 32181
Alignment:
Q  427 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 495  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||    
T  32113 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaata 32181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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