View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_3 (Length: 432)
Name: NF16066_low_3
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 55455269 - 55455654
Alignment:
| Q |
19 |
tgacataccattttatggtgtgaattctttttcattctttcagcggcgttagttaaatcaaggaactcccataaacgttatatcatatatgtagattagt |
118 |
Q |
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| T |
55455269 |
tgacataccattttatggtgtgaattctttttcattctttcagcggcgttagttaaatcaaggaactcccataaacgttatatcatatatgtagattagt |
55455368 |
T |
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| Q |
119 |
aacattacagaaaaactcctacacattgaccgattttgcaaccgatttaagagactgaaaaatgttaaatcactcactaaatcggtggtaacattagcga |
218 |
Q |
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| T |
55455369 |
aacattacagaaaaactcctacacaatgaccgattttgcaaccgatttaagagactgaaaaatgttaaatcactcactaaatcggtggtaacattagcga |
55455468 |
T |
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| Q |
219 |
ctaatgatttagcgattttttgccaattgatatctaaatcagtcacaaacttatatagctcgccaaatggtaaaccttcagttgtgtaagctagtaaaga |
318 |
Q |
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| T |
55455469 |
ctaatgatttagcgattttttgccaattgatatctaaatcagtcacaaacttatatagcttgccaaatggtaaaccttcagttgtgtgagctagtaaaga |
55455568 |
T |
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| Q |
319 |
ttgcttggataagggggaaatgacggaaaagagaggtataagttttcgaatatgtcacactaaggaaactactttaatcagaatag |
404 |
Q |
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| T |
55455569 |
ttgcttggataagggggaaatggcggaaaagagaggtataagttttcgaatatgtcacactaaggaaactactttaatcagaatag |
55455654 |
T |
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