View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_4 (Length: 413)
Name: NF16066_low_4
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 1712958 - 1712608
Alignment:
| Q |
19 |
aatatccttaaacaaacaaacatacataatcaacaagaggcaccttggtgattaaacaaggtaaggaagtagcatacagctctgcatatcatcgaaacaa |
118 |
Q |
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| T |
1712958 |
aatatccttaaacaaacaaacatacataatcaacaagaggcaccttggtgattaaacaaggtaaggaagtagcatacagctctgcatatcatcgaaacaa |
1712859 |
T |
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| Q |
119 |
gcacagactccagaagaccattgatttgaaacattgctgctactaccaccatggtgtagaggagagacactcattgcctctgaatctgattgacccaatg |
218 |
Q |
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| T |
1712858 |
gcacagattccagaagaccattgatttgaaacattgctactactaccaccatggtgtagaggagagagactcattgcctctgaatctgattgacccaatg |
1712759 |
T |
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| Q |
219 |
gaatgtaagcaggtggaacataaccaacttggttcttcatatttgttgttacaataatggaattgttactacaaaacaaaaccnnnnnnnnttaattaat |
318 |
Q |
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| T |
1712758 |
gaatgtaagcaggtggaacataaccaacttggttcttcatatttgttgttacaataatggaattgttactacaaaacaaaaccaaaaataattaattaat |
1712659 |
T |
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| Q |
319 |
taattataaaagcaagcttgtgaaagacaaaatcatgaaacccataaatct |
369 |
Q |
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| T |
1712658 |
taattataaaagcaagcttatgaaagacaaaatcatgaaacccataaatct |
1712608 |
T |
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