View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16066_low_5 (Length: 373)

Name: NF16066_low_5
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16066_low_5
NF16066_low_5
[»] chr5 (5 HSPs)
chr5 (188-373)||(17380124-17380309)
chr5 (9-140)||(17380467-17380594)
chr5 (9-137)||(17389519-17389643)
chr5 (188-373)||(17392619-17392799)
chr5 (188-327)||(17383956-17384088)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 188 - 373
Target Start/End: Complemental strand, 17380309 - 17380124
Alignment:
Q  188 taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata 287  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17380309 taaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata 17380210  T
Q  288 tatgtcttgatttgaaaatcagcttccaatggttcatagtctatattttaaatgctgttagatgagatgaaacacaatctagaaca 373  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17380209 tatgtcgtgattcgaaaatcagcttccaatggttcatagtctatattttaaatgatgttagatgagatgaaacacaatctagaaca 17380124  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 17380594 - 17380467
Alignment:
Q  9 gagagatgaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaaca 108  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||| |||||||||||| |||||||||    
T  17380594 gagaaatgaagaatatcagtaatagtataacagaaaaattaagtcatgtagaaatattttgtgcagac----cacacttcaatccaattaagacctaaca 17380499  T
Q  109 acaattcaaaattcaaaagatattgacacaag 140  Q
    ||||||||||||||||||||||||||||||||    
T  17380498 acaattcaaaattcaaaagatattgacacaag 17380467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 17389643 - 17389519
Alignment:
Q  9 gagagatgaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaaca 108  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||| |||    ||| || |||||||||| |||||||||    
T  17389643 gagaaatgaagaatatcaataatagtataacagaaaaaataagtcatgtagaaa-attatgtgcacacct---acaagtaaatccaattatgacctaaca 17389548  T
Q  109 acaattcaaaattcaaaagatattgacac 137  Q
    |||||||||||||||||||||||||||||    
T  17389547 acaattcaaaattcaaaagatattgacac 17389519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 373
Target Start/End: Complemental strand, 17392799 - 17392619
Alignment:
Q  188 taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata 287  Q
    |||||||||||||||||||||||||| ||||||||||||||||  |||| ||||  |||||||||||  ||||||||||    || ||||||||||||||    
T  17392799 taaattttctaaaaattgagggctctccattggatttgggtga--agagtatgatgaatggtcataacttgtaaaagtc----tcgcattctgcaaaata 17392706  T
Q  288 tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaaca 373  Q
    |||||   || | |||||||||||||  | | |||||||||||| | || ||||  |||||||||||| |||||||| ||| |||||    
T  17392705 tatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca 17392619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 17384088 - 17383956
Alignment:
Q  188 taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata 287  Q
    |||||||||||||||||||||||||| ||||||||||||||||  |||| ||| ||||||||||| ||||| |||||||    || ||||||||||||||    
T  17384088 taaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcat-atctgcaaaagtc----tcgcattctgcaaaata 17383996  T
Q  288 tatgtcttgatttgaaaatcagcttccaatggttcatagt 327  Q
    |||||   || | |||||||||||||| | | ||||||||    
T  17383995 tatgttgcgaatcgaaaatcagcttcccaagcttcatagt 17383956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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