View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_6 (Length: 370)
Name: NF16066_low_6
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_6 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 17380147 - 17379782
Alignment:
| Q |
8 |
tgagaagaaacacaatctagaacatgataaggatattcccaatgctctatgttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaa |
107 |
Q |
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| T |
17380147 |
tgagatgaaacacaatctagaacatgatatggatattcccaatgctctaagttgttgagttcttttcttgtcgatcaaagacaaagtaggatttgtaaaa |
17380048 |
T |
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| Q |
108 |
atactcagaagataaga--gagtnnnnnnncagtataaactacccattgatgtgtcaaactaatctttataaagttaagagtttgaagtttgggacaatc |
205 |
Q |
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| T |
17380047 |
atactcagaagataagatcgagtaaaaaaacagcataaactacccattgatgtgtcaaacaaatctttataaagttaagagtttgaagtttgggccaatc |
17379948 |
T |
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| Q |
206 |
tgcagcatttt-aacctgtgtgaaatattaattttcctatgtggtttggttttgagcatttggcttgaccggactattaatctgtctccaccttagaaga |
304 |
Q |
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| T |
17379947 |
tgtagcatttttaacctgtgtgaaatattaattttcctatgtggtttgattttgagcatttggcttgatcagactattaatctctctataccttagaaga |
17379848 |
T |
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| Q |
305 |
caatgttaacttgcgttattgattgttttttggttatattagtctgctgataattttttatggaat |
370 |
Q |
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| T |
17379847 |
caatgttaacttgcgttattgattgttttttggttatattagtctgatgataattttttatggaat |
17379782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 17395366 - 17395245
Alignment:
| Q |
236 |
ttttcctatgtggtttggttttgagcattt-ggcttgaccggactattaatctgtctccaccttagaagacaatgttaacttgcgttattgattgttttt |
334 |
Q |
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| T |
17395366 |
ttttcctatgtggtttgattttgaacattttggtttgactggactatt----tgtc-ccaccttagaagaaactgttaacttgcgctattgattgttatt |
17395272 |
T |
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| Q |
335 |
tggttatattagtctgctgataatttt |
361 |
Q |
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| T |
17395271 |
tgattatattagtttgctaataatttt |
17395245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 17377564 - 17377460
Alignment:
| Q |
8 |
tgagaagaaacacaatctagaacatgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaa |
106 |
Q |
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| T |
17377564 |
tgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattattcgcctgtcgatccgagacaaaataggatttgtaaa |
17377468 |
T |
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| Q |
107 |
aatactca |
114 |
Q |
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| T |
17377467 |
aatactca |
17377460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 17383926 - 17383826
Alignment:
| Q |
14 |
gaaacacaatctagaacatgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatact |
112 |
Q |
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| T |
17383926 |
gaaacacattctggaacatgatctggatattcccaatgctctatgcttgctgaattctccgcctgtcaatccgagacaaaataggatatgtaaaaatact |
17383827 |
T |
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| Q |
113 |
c |
113 |
Q |
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| T |
17383826 |
c |
17383826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 17392642 - 17392578
Alignment:
| Q |
8 |
tgagaagaaacacaatctagaacatgataaggatattcccaatgctctat-gttgttgagttctt |
71 |
Q |
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| T |
17392642 |
tgagacgaaacacattctggaacatgatctggatattcccaatgctctatggttgttgaattctt |
17392578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 26052821 - 26052928
Alignment:
| Q |
8 |
tgagaagaaacacaatctagaacatgataaggatattcccaatgctctat-gttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaa |
106 |
Q |
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| T |
26052821 |
tgagatgaaacacattctggaacatgatctggatattcccaatgctctatggttgttgaatacttctcctgtcaatccgatacaaaataggatttgtaaa |
26052920 |
T |
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| Q |
107 |
aatactca |
114 |
Q |
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|||||||| |
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| T |
26052921 |
aatactca |
26052928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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