View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16066_low_9 (Length: 342)
Name: NF16066_low_9
Description: NF16066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16066_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 7499871 - 7500111
Alignment:
| Q |
7 |
atcatcatgtatgtgatttataaccttttggcgatcggtagcgacagatttctccatctctttcctgtaacataataaaagaacaagtttatactttttg |
106 |
Q |
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| T |
7499871 |
atcatcatgtatgtgatttataaccttttggcgcttggtagcgacagatttctccatctctttcctgtaacataataaaagaacaagtttatactttttg |
7499970 |
T |
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| Q |
107 |
aaattgaggacgattgtatttgaagaaatctctaatca-ttttttctgtgttttaagcatgaat---taatcataatatacagtatacgaaacaagtatg |
202 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7499971 |
aaattgatgacgattgtatttgaagaaatctctaatcatttttttctgtgttttaagcatgaattaataatcataatatacagtatacgaaacaagtatg |
7500070 |
T |
|
| Q |
203 |
aatacaaccatagtacataattacatatctaaatacacatg |
243 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| |
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| T |
7500071 |
aatacaaccacaatacataattacatatctaaatacacatg |
7500111 |
T |
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