View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16067_high_13 (Length: 331)

Name: NF16067_high_13
Description: NF16067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16067_high_13
NF16067_high_13
[»] chr6 (15 HSPs)
chr6 (30-331)||(4265938-4266239)
chr6 (30-93)||(4458655-4458718)
chr6 (130-326)||(4623353-4623549)
chr6 (214-326)||(4471047-4471159)
chr6 (229-328)||(4482010-4482109)
chr6 (131-307)||(4259081-4259257)
chr6 (229-326)||(4575600-4575697)
chr6 (131-304)||(4627197-4627370)
chr6 (231-326)||(4561809-4561904)
chr6 (229-315)||(3173148-3173234)
chr6 (201-315)||(4489094-4489208)
chr6 (229-307)||(4255544-4255622)
chr6 (132-169)||(4458816-4458853)
chr6 (217-298)||(4462343-4462424)
chr6 (229-326)||(4298384-4298481)
[»] chr5 (1 HSPs)
chr5 (30-331)||(24104032-24104342)
[»] scaffold0477 (1 HSPs)
scaffold0477 (131-326)||(3408-3603)
[»] chr7 (1 HSPs)
chr7 (217-326)||(3087878-3087987)
[»] scaffold0288 (1 HSPs)
scaffold0288 (225-326)||(2340-2441)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 4266239 - 4265938
Alignment:
Q  30 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatatagattcatgcacatttctcttnnnnnnnnnnnnggatca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||    
T  4266239 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatatagattcatgcacatttctcttaaaaagaaaaaaggatca 4266140  T
Q  130 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266139 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 4266040  T
Q  230 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266039 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattg 4265940  T
Q  330 at 331  Q
    ||    
T  4265939 at 4265938  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 4458655 - 4458718
Alignment:
Q  30 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4458655 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga 4458718  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 326
Target Start/End: Original strand, 4623353 - 4623549
Alignment:
Q  130 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 229  Q
    |||||||||||||||||||||| |||||||||   || ||| ||| |||| || |||  | ||||||| |||  |||| |   ||| || |||||||  |    
T  4623353 taattgttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaa 4623452  T
Q  230 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 326  Q
    ||||||||||||| ||||| ||||| | ||||||||| | |||||||||||||||||| |||||||||| |||||||| || |||| || |||||||    
T  4623453 ttgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcaga 4623549  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 4471047 - 4471159
Alignment:
Q  214 ggagaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaac 313  Q
    |||||||||| || ||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||  | |||||||| ||| || |||| ||    
T  4471047 ggagaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagac 4471146  T
Q  314 catcattggcaga 326  Q
    || || |||||||    
T  4471147 cagcagtggcaga 4471159  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 4482010 - 4482109
Alignment:
Q  229 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt 328  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||||    
T  4482010 attgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataataccagcagtggcagatt 4482109  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 307
Target Start/End: Complemental strand, 4259257 - 4259081
Alignment:
Q  131 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 230  Q
    ||||||||||||||||||||| ||||||||||  || ||| ||| |||| || |||  | ||||||| |||  |||| |   |||||| |||||||  ||    
T  4259257 aattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaat 4259158  T
Q  231 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaa 307  Q
    |||||||||||| ||||| ||||| | |||  |||| | |||||||||||| ||||| ||||||||||  |||||||    
T  4259157 tgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaa 4259081  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 4575600 - 4575697
Alignment:
Q  229 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 326  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||    
T  4575600 attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcaga 4575697  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 304
Target Start/End: Original strand, 4627197 - 4627370
Alignment:
Q  131 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 230  Q
    ||||||||||||||||||||| ||||||||||  || ||| ||| |||| || ||| || ||||||| | | ||||| |  | | |||||||| |   ||    
T  4627197 aattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaat 4627296  T
Q  231 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtg 304  Q
    |||||||||||||||||| ||||| | ||| ||||| | |||  ||||||| ||||| |||||||||| |||||    
T  4627297 tgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtg 4627370  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 4561809 - 4561904
Alignment:
Q  231 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 326  Q
    |||||||||||||||||| |||||| ||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||    
T  4561809 tgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcaga 4561904  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 3173148 - 3173234
Alignment:
Q  229 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaacca 315  Q
    |||||||| ||||||||||| ||| |||||| |||||| ||||| || ||||||||||| |||||||||| ||| || |||| ||||    
T  3173148 attgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagacca 3173234  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 4489208 - 4489094
Alignment:
Q  201 agatgcattgcatggagaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaatt 300  Q
    ||||||| | ||||| ||||||| ||  |||||||||||||||||||| |||||||||| |||||| | ||| |  ||||| ||||| |||||||||| |    
T  4489208 agatgcactacatggggaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaact 4489109  T
Q  301 ggtggaataaaacca 315  Q
    || || |||| ||||    
T  4489108 ggagggataagacca 4489094  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 4255622 - 4255544
Alignment:
Q  229 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaa 307  Q
    |||||||||||||| ||||| ||||| | ||| ||||| | |||||||||||| ||||| |||||||||| | ||||||    
T  4255622 attgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaactagtggaa 4255544  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 4458816 - 4458853
Alignment:
Q  132 attgttacctttgagtggtagtagaccttttcgaatca 169  Q
    |||||||||||||||||||||||||||||||| |||||    
T  4458816 attgttacctttgagtggtagtagaccttttccaatca 4458853  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 4462343 - 4462424
Alignment:
Q  217 gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaa 298  Q
    ||||||| || ||||||||||||| ||| ||| || ||||| | |||||| |||||||||||||| ||||| | ||||||||    
T  4462343 gaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaa 4462424  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 4298481 - 4298384
Alignment:
Q  229 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 326  Q
    |||||||||||||||||||||||||| | ||| ||||| | |||  || |||| | ||| |||||||||| |||||| | || |||| || |||||||    
T  4298481 attgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcaga 4298384  T

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Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 331
Target Start/End: Original strand, 24104032 - 24104342
Alignment:
Q  30 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacat-----atatagattcatgcacatttctcttnnnnnnnnnnnng 124  Q
    ||||| |||||||||||||| || |||||||||||||||||||||  ||||||| ||     ||||||| |||||||||||||||||            |    
T  24104032 attttaatgatgcacataattgccatgcgactgatgcagccctaagtgtgatcaaattaaatatatagaatcatgcacatttctcttaaaaagaaaaaag 24104131  T
Q  125 gatcataattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaa 224  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  24104132 gatcataatttttacctttgagtggtactagacctttttgaatcagattaggatattgaaaagtacacaagaaggtagatgcattgcatggagaaaagaa 24104231  T
Q  225 aaggattgggagtgcatgttcttccgcagcatctat----tgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcatt 320  Q
    ||| ||||||||||||||||||||  ||||||| ||    |||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  24104232 aagaattgggagtgcatgttcttcaacagcatcgatcaactgtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcatt 24104331  T
Q  321 ggcagattgat 331  Q
    |||||||||||    
T  24104332 ggcagattgat 24104342  T

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Target: scaffold0477 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 326
Target Start/End: Complemental strand, 3603 - 3408
Alignment:
Q  131 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 230  Q
    |||| |||||||||||||||| ||| |||||| ||| ||| |||  ||| || |||| | ||||||| | | ||||| |||  |  ||||||| ||  ||    
T  3603 aatttttacctttgagtggtattagtcctttttgaaacagtgtacaaaagtgtaaagcagacaagaaagaacatgcactgccggtggaaaagagaacaat 3504  T
Q  231 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 326  Q
    |||||||||||||||||| ||||| | ||| ||||| |||||||||||||| |  || | |||||||| | |||||| || |||| || |||||||    
T  3503 tgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcaga 3408  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 3087878 - 3087987
Alignment:
Q  217 gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccat 316  Q
    ||||||| |||||||||||||||||  ||||| ||| | | ||| ||||| ||||||||| |||| |  || |||||||||| ||||||||||| ||||     
T  3087878 gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag 3087977  T
Q  317 cattggcaga 326  Q
    ||| ||||||    
T  3087978 catcggcaga 3087987  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 2441 - 2340
Alignment:
Q  225 aaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggca 324  Q
    ||||||||||||||||| |||||| ||||| | ||| ||||| | |||||||||||| ||||| |||| ||| | ||| || |||| ||||  |||||||    
T  2441 aaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggca 2342  T
Q  325 ga 326  Q
    ||    
T  2341 ga 2340  T

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