View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16067_high_2 (Length: 500)
Name: NF16067_high_2
Description: NF16067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16067_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 25011442 - 25010967
Alignment:
| Q |
1 |
tttttgtagcaagacaacaatctactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattgg |
100 |
Q |
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| T |
25011442 |
tttttgtagcaagacaacaatctactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattgg |
25011343 |
T |
|
| Q |
101 |
atttggtgcagtcacaaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25011342 |
atttggtgcagtcacaaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaaca |
25011243 |
T |
|
| Q |
201 |
attgtaaaatgatcattagtgctaacctttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaa |
300 |
Q |
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| T |
25011242 |
attgtaaaatgatcattagtgctaacctttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaa |
25011143 |
T |
|
| Q |
301 |
tgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttcatttgaatttggctc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
25011142 |
tgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttcatttgaatttggctc |
25011043 |
T |
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| Q |
401 |
ctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggcgttatgggatg |
476 |
Q |
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| T |
25011042 |
ctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggtgttatgggatg |
25010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
| Q |
178 |
gagttcaaatcctatatgggacaattgtaaaatgatcatt |
217 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| |
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| T |
4752841 |
gagttcaaatcctatatggaacagttgtaaaatgatcatt |
4752802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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