View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16067_high_4 (Length: 435)
Name: NF16067_high_4
Description: NF16067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16067_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 140 - 404
Target Start/End: Original strand, 31658583 - 31658847
Alignment:
| Q |
140 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggccataaacattctcaaattcaaatgatt |
239 |
Q |
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| T |
31658583 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
31658682 |
T |
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| Q |
240 |
caatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
339 |
Q |
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| T |
31658683 |
caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
31658782 |
T |
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| Q |
340 |
ataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatg |
404 |
Q |
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| T |
31658783 |
ataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatg |
31658847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 407
Target Start/End: Complemental strand, 31650553 - 31650366
Alignment:
| Q |
220 |
attctcaaattcaaatgattcaatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgag |
319 |
Q |
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| T |
31650553 |
attctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgag |
31650454 |
T |
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| Q |
320 |
aacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatgatg |
407 |
Q |
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| T |
31650453 |
aacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatg |
31650366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 31658520 - 31658558
Alignment:
| Q |
4 |
agacatcataagttaaacgatcaaataaatctcccatta |
42 |
Q |
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| T |
31658520 |
agacatcataagttaaacgatcaaataaatctcccatta |
31658558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
353 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
397 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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