View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16067_low_3 (Length: 348)
Name: NF16067_low_3
Description: NF16067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16067_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 53 - 332
Target Start/End: Original strand, 55271337 - 55271612
Alignment:
| Q |
53 |
cataattaatcctaaaactaatgaagagaaataagggcaagtaaagtgagtgagtgagtaacatactatatgttaattcaacaacaaaatgggattgttc |
152 |
Q |
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| T |
55271337 |
cataattaatcctaaaactaatgaagagaaataagggcaagtaaagtgagtgagtgagtaacatactatatgttaattcaacaacaaaatgggattgttc |
55271436 |
T |
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| Q |
153 |
atcgccaaatccaagaaaagcattggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaagaa |
252 |
Q |
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| T |
55271437 |
atcgccaaatccaagaaaagcattggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaagaa |
55271536 |
T |
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| Q |
253 |
ccatatccaagacatgaatatgaatatgatgatggtatatatgtattttaagcatgcaatcaataatctaacaaaagtta |
332 |
Q |
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| T |
55271537 |
ccatatccaagacatgaatatgaatatgatgatgg----tatgtattttaagcatgcaatcaataatctaacaaaagtta |
55271612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 55265488 - 55265660
Alignment:
| Q |
109 |
agtaacatactatatgttaattcaacaacaaaatgggattgttcatcgccaaatccaagaaaagcattggcatatttctcctcaggaacatctctctgcc |
208 |
Q |
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| T |
55265488 |
agtaacatactatatgttaattcaacagcaaaatgggaatgttcatcaccaaatccaacaaaagcgttggcatatttctcctcaggaacatctctctgcc |
55265587 |
T |
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| Q |
209 |
tcaaaagtttcatcccaagagcctcagtataaaacctgaaagaaccatatccaagacatgaatatgaatatga |
281 |
Q |
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| T |
55265588 |
tcaaaagtttcatcccaagagcctcagtataaaacctgaaagaaccatatccaagacatgaatatgaatatga |
55265660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 55265687 - 55265725
Alignment:
| Q |
294 |
tgtattttaagcatgcaatcaataatctaacaaaagtta |
332 |
Q |
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| T |
55265687 |
tgtattttaagcatgcaatcaataatctaacaaaagtta |
55265725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 8302916 - 8303053
Alignment:
| Q |
110 |
gtaacatactatatgttaattcaacaacaaaatgggattgttcatcgccaaatccaagaaaagcattggcatatttctcctcaggaacatctctctgcct |
209 |
Q |
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||||||||||||| |||||||| || ||||||| |||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| |
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| T |
8302916 |
gtaacatactataagttaattccacgacaaaattggatgtttccgggccaaatccaagaaaagcattggcgtatttctcctctggaacatctcttttcct |
8303015 |
T |
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| Q |
210 |
caaaagtttcatcccaagagcctcagtataaaacctga |
247 |
Q |
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|||||| ||||| |||| ||| ||||| |||||||||| |
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| T |
8303016 |
caaaagcttcattccaaaagcttcagtgtaaaacctga |
8303053 |
T |
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