View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_1 (Length: 768)
Name: NF16068_high_1
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 41638714 - 41639102
Alignment:
| Q |
16 |
taggtatcagtatcaggcatctcacacataggagtggtataataaaaaggggtaaccatatatttaatcaaaccacgatacactgatgttgggtagttga |
115 |
Q |
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| T |
41638714 |
taggtatcagtatcaggcatctcacacataggagtggtataataaaaaggggtaaccatatatttaatcaaaccacgatacactgatgttgggtagttga |
41638813 |
T |
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| Q |
116 |
gtttgtaaccagcctttccaccaccaaagtcagtgagaatgttgcaaacattatcaggagatgacactaacctcacatagcaaccttttgtatccaactt |
215 |
Q |
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| T |
41638814 |
gtttgtaaccagcttttccaccaccaaagtcagtgagaatgttgcaaacattatcaggagatgacactaacctcacatagcaaccttttgtatccaactt |
41638913 |
T |
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| Q |
216 |
tttgccgtatttgtatttgtccactgtaatgtcgtatagtcctaactcatctgttgtgtcacttgtataatacataaccctgtttctcttgtccatacat |
315 |
Q |
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| T |
41638914 |
tttgccgtatttgtatttgtccactgtaatgtcgtatagtcctaactcatctgttgtgtcacttgtataatacataaccctgtttctcttgtccatacat |
41639013 |
T |
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| Q |
316 |
gttagtgacaccttagctcctgttagtgttttgcacaattagtaaccaaaccaaccaaagtatatgctcatatgcattagagtctactttttat |
409 |
Q |
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| T |
41639014 |
gttagtgacaccttagctcctgttagtgttttgcacaattagt-----aaccaaccaaagtatatgctcatatgcattagagtctacttgttat |
41639102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 403 - 752
Target Start/End: Original strand, 41639151 - 41639506
Alignment:
| Q |
403 |
tttttattttattttaaaatgtaacaaaatgataatatcacatacctttaattggcttatcaccagaaacccattcgttccatcccttgctacaatcctg |
502 |
Q |
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| T |
41639151 |
tttttattttatttttaaatgtaacaaaatgataatatcacatacctttaattggcttatcaccagaaacccattcgttccatcccttgctacaatcctg |
41639250 |
T |
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| Q |
503 |
gcacaacacttttccaaccacgtgaatgacttgtgctggttcttcccaagctgagactagtatgctattggtggtgcaacagactaccattgcagtgatc |
602 |
Q |
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| T |
41639251 |
gcacaacacttttccaaccacgtgaatgacttgtgctggttcttcccaagctgagactagtatgctattggtggtgcaacagactaccattgcagtgatc |
41639350 |
T |
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| Q |
603 |
atcaatgctattgcaaatgccatctttcttctcaattcacaagggtttatggctacattgacttgaatgaagcaaatac------atatatatataacaa |
696 |
Q |
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| T |
41639351 |
atcaatgctattgcaaatgccatcgttcttctcaattcacaagggtttatggctacattgacttgaatgaagcaaatacatatatatatatatataacaa |
41639450 |
T |
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| Q |
697 |
gccagctaagcaggggttggttagtgtgagtatgaattgggaataaacgtggtgaa |
752 |
Q |
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| T |
41639451 |
gccagctaagcaggggttggttagtgtgagtatgaattgggaataaacgtggtgaa |
41639506 |
T |
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