View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_14 (Length: 554)
Name: NF16068_high_14
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 306 - 540
Target Start/End: Complemental strand, 44155892 - 44155658
Alignment:
| Q |
306 |
aaaataataactagctgtagatggaatatatatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggtagccat |
405 |
Q |
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| T |
44155892 |
aaaataataactaggtgtagatggaatatatatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggtagccaa |
44155793 |
T |
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| Q |
406 |
atattcattcgtattttttctagaatccatgaatttcttctcattcatcaaatcattacctgcaataattaattaataacagttggtatacaaaaacaaa |
505 |
Q |
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| T |
44155792 |
atattcattcgtattttttctagaatccatgaatttcttctcattcatcaaatcgttacctgcaataattaattaataatagttggtatacaaaaacaaa |
44155693 |
T |
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| Q |
506 |
gcaaattactctcataacacacaacatatattaat |
540 |
Q |
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| T |
44155692 |
gcaaattactctcataacacacaacatatattaat |
44155658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 44156103 - 44156034
Alignment:
| Q |
131 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
200 |
Q |
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| T |
44156103 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
44156034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 44156221 - 44156154
Alignment:
| Q |
13 |
aatattagtaaatcagggggtcaagaaccaaacttgtgatatcaatcaatcctataattatattgtgt |
80 |
Q |
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| T |
44156221 |
aatattagtaaatcagggggtcaagaatcaaacttgtgatatcaatcaatcctataattatattgtgt |
44156154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 44156001 - 44155920
Alignment:
| Q |
213 |
gaaacatatagtatagtattgtatgaaatttgatgagtatatactc-taaggtttcataatgtaaaaaatatatagttttat |
293 |
Q |
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| T |
44156001 |
gaaagatatagtatagtattgtatgaaatttgatgaatatatactcttaaggtttcaaaatgtaaaaaatatatagttttat |
44155920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 33218436 - 33218372
Alignment:
| Q |
335 |
atatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggt |
399 |
Q |
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| T |
33218436 |
atatgcacttacttccatggaacatcaccaactagcatccaatcaccatctttatcttcataggt |
33218372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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