View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_18 (Length: 516)
Name: NF16068_high_18
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 41146142 - 41146619
Alignment:
| Q |
22 |
aagacatcgatcatccttcccattgcaacctgtagttggtttaataaaaaatgtttttccttacttccttgattcttaattcaatgttgtagattgtatg |
121 |
Q |
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| T |
41146142 |
aagacatcgatcatccttcccattgcaacctgtagttggtttaataaaaaatgtttttccttacttccttgattcttaattcaatgttgtagattgtatg |
41146241 |
T |
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| Q |
122 |
aaatgcgtgccccaagaagcaacaactagctatgataacaaatgataatccacaataagaaattttgcggttccacttgctcatgaagcaaacccaataa |
221 |
Q |
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| T |
41146242 |
aaatgcgtgccccaagaagcaacaactagctatgataacaaatgataatccacaataagaaattttgcggttccacttgctcatgaagcaaacccaataa |
41146341 |
T |
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| Q |
222 |
taataccagtgacagtgagcacgcacagtatgagcctgcaaaattctcataatatgcataaactcaatctacagctgtagctaggcataaagaatcttga |
321 |
Q |
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| T |
41146342 |
taataccagtgacagtgagcacgcacagtatgaacctgcaaaattctcataatatgcataaactcaatctacagctgtagctaggcataaagaatcttga |
41146441 |
T |
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| Q |
322 |
cgaagataatatcctcatccctccagcttttttcaagttcaaaatcccaagtgatttttaaagccatctggtcactaactcaattatatatgcatccaac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41146442 |
cgaagataatatcctcatccctccagcttttttcaagttcaaaatcccaagtgatttttaaagccatctggtcactaactcaattatatatgcatccaac |
41146541 |
T |
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| Q |
422 |
acaggggcatctaatgcccatggaagctatgatgcaaacaggtttacatgcttgtagcgtgtcagcttccttagccca |
499 |
Q |
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| T |
41146542 |
acaggggcatctaatgcccatggaagctatgatgcaaacaggtttacatgcttgtagcgtgtcagcttccttagccca |
41146619 |
T |
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