View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_high_19 (Length: 515)

Name: NF16068_high_19
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_high_19
NF16068_high_19
[»] chr8 (8 HSPs)
chr8 (163-499)||(27664971-27665306)
chr8 (296-496)||(27676889-27677079)
chr8 (1-98)||(27664809-27664906)
chr8 (310-496)||(21401406-21401595)
chr8 (310-496)||(21795899-21796088)
chr8 (4-98)||(27644073-27644167)
chr8 (354-469)||(13502198-13502307)
chr8 (381-455)||(10363653-10363727)
[»] chr5 (3 HSPs)
chr5 (296-402)||(11273441-11273547)
chr5 (319-499)||(20161918-20162101)
chr5 (231-292)||(23276008-23276069)
[»] chr4 (2 HSPs)
chr4 (303-496)||(24902825-24903021)
chr4 (231-293)||(24904278-24904340)
[»] chr2 (1 HSPs)
chr2 (315-455)||(19989032-19989172)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 163 - 499
Target Start/End: Original strand, 27664971 - 27665306
Alignment:
Q  163 tgtgaccattacgaaaaaatggcagaatataaaggtgttagatgatgtattaattacctannnnnnnnacgtttgatgagcatagaaacttgcttcctat 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||    
T  27664971 tgtgagcattacgaaaaaatggcagaatataaaggtgttagatgatgtattaattacctattttttt-acgtttgatgagcataaaaacttgcttcctat 27665069  T
Q  263 ccttttctaatgatttgagcccaagctttttcatgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttacttttt 362  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27665070 ccttttctaatgatttgagcccaaactttttcatgacagagacattgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttacttttt 27665169  T
Q  363 cattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataag 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27665170 cattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataag 27665269  T
Q  463 tgaaggaggtgaaggctagtgacatagttaacaaaat 499  Q
    |||||||||||||||||||||||||||||||||||||    
T  27665270 tgaaggaggtgaaggctagtgacatagttaacaaaat 27665306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 296 - 496
Target Start/End: Complemental strand, 27677079 - 27676889
Alignment:
Q  296 tgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaa 395  Q
    |||||| |||||| |||||||||||||||||||||||||||  ||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  27677079 tgacagggacactactcttatgaatgttgttgccaaagttctccctaaaacgattgccttactttttcattttcatattgagagaaatgtaagagctaaa 27676980  T
Q  396 tgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataagtgaaggaggtgaaggctagtgacatagttaaca 495  Q
    | |||||| ||||| |||||          ||||||||||||||||| |||| |||||| ||| |||||||||||||||| || ||||||||||||||||    
T  27676979 tccatcatagactgcagagt----------ttgaaggatgtaaaagttgatgggaaagataaagaagtgaaggaggtgaatgcaagtgacatagttaaca 27676890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27664809 - 27664906
Alignment:
Q  1 ttctagagcttgtattttagtaattgttaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaaccattgaacatgga 98  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27664809 ttctagagcttgtattttagtaattgtcaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaaccattgaacatgga 27664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 496
Target Start/End: Complemental strand, 21401595 - 21401406
Alignment:
Q  310 ctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactg 409  Q
    |||| ||||||||| ||||||| ||||  |||||||| || || ||||||| | |||||||||||| ||  | ||||| |||||||||||||| |||||     
T  21401595 ctctgatgaatgttattgccaatgttctacctgaaactgccgctttactttgttattttcatattgggaagagtgtaaaagctaaatgcatcacggactc 21401496  T
Q  410 tagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaa 496  Q
     | |||||| || |||||||||||||||||||| |||| |||||||   ||  ||||||||||||||||||  |||||| |||| |||||    
T  21401495 caaagtcaaaccgaagttgaaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaa 21401406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 496
Target Start/End: Complemental strand, 21796088 - 21795899
Alignment:
Q  310 ctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactg 409  Q
    |||| ||||||||| ||||||| ||||  |||||||| || || ||||||| | |||||||||||| ||  | ||||| |||||||||||||| |||||     
T  21796088 ctctgatgaatgttattgccaatgttctacctgaaactgccgctttactttgttattttcatattgggaagagtgtaaaagctaaatgcatcacggactc 21795989  T
Q  410 tagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaa 496  Q
     | |||||| || |||||||||||||||||||| |||| |||||||   ||  ||||||||||||||||||  |||||| |||| |||||    
T  21795988 caaagtcaaaccgaagttgaaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaa 21795899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 27644073 - 27644167
Alignment:
Q  4 tagagcttgtattttagtaattgttaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaaccattgaacatgga 98  Q
    ||||||||||| |||||||||||| | |||| |||||||| ||  |||||||| ||||||||||| |||||| |||||| | |||||||||||||    
T  27644073 tagagcttgtaatttagtaattgtcacataagatcagctaggagcattagtttgtgcaaataatacgcacaaggatcctgatcattgaacatgga 27644167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 469
Target Start/End: Original strand, 13502198 - 13502307
Alignment:
Q  354 ttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaag 453  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||| ||||  || ||||||||||| ||       |||||||||||||| ||||||||||    
T  13502198 ttactttgtcattttcatattgagaaaaatgtaagggctaaatgtatcacagagtgtagagtcaaacc------taaggatgtaaaagtggatgagaaag 13502291  T
Q  454 aaaaataagtgaagga 469  Q
    | ||| |||| |||||    
T  13502292 ataaagaagtcaagga 13502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 10363653 - 10363727
Alignment:
Q  381 aatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa 455  Q
    |||||||||| ||| ||||||||||| |  |||||||| ||||||  |||||||||||||||  ||| |||||||    
T  10363653 aatgtaagagttaactgcatcatggattacagagtcaacccaaagccgaaggatgtaaaagtttatgggaaagaa 10363727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 11273441 - 11273547
Alignment:
Q  296 tgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaa 395  Q
    |||||| ||||||||| | ||||||||||||| ||||||||  |||||||  | ||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  11273441 tgacagggacactgctgtgatgaatgttgttggcaaagttctccctgaaattgttgctttactttgtcattttcatattgagaaaaatgtaagagctaaa 11273540  T
Q  396 tgcatca 402  Q
    |||||||    
T  11273541 tgcatca 11273547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 499
Target Start/End: Complemental strand, 20162101 - 20161918
Alignment:
Q  319 atgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaa 418  Q
    ||||||||||||||||||    |||||| | ||| |||| ||||||||||||||||| ||  |||||||||  |||| |||| | | |||| | ||||||    
T  20162101 atgttgttgccaaagttctctgtgaaactgttgctttaccttttcattttcatattgggaagaatgtaagatgtaaacgcattacgaactgcaaagtcaa 20162002  T
Q  419 tccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaaaat 499  Q
    |||||||| ||| ||||||||| |  ||  |||||||   ||  ||| |||||| |||||||| ||||||||||||||||||||    
T  20162001 tccaaagtcgaatgatgtaaaatttaataggaaagaagtgaaggaagagaaggatgtgaaggcaagtgacatagttaacaaaat 20161918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 23276069 - 23276008
Alignment:
Q  231 acgtttgatgagcatagaaacttgcttcctatccttttctaatgatttgagcccaagctttt 292  Q
    |||||| |||||  ||||||||||||||||| | ||||| |||||||||||| ||| |||||    
T  23276069 acgttttatgagtgtagaaacttgcttcctaacgttttccaatgatttgagctcaaactttt 23276008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 496
Target Start/End: Complemental strand, 24903021 - 24902825
Alignment:
Q  303 gacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatca 402  Q
    |||| |||||| |||| |||||||||||||||||   ||||||| || || ||||||| | ||||||||||||| |  |||||||| |||||||| ||||    
T  24903021 gacaatgctctgatgattgttgttgccaaagttctctctgaaactgccgctttactttgttattttcatattgaaaagaatgtaagggctaaatgaatca 24902922  T
Q  403 tggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaa 496  Q
     ||| |||||||||||  | |||| || |||||||||||| |||| || ||||   ||| |||||||||| |||||  | |||||| ||||||||||    
T  24902921 cggaatgtagagtcaaatcgaagtcgatggatgtaaaagttgatgggagagaagtgaaaaaagtgaaggatgtgaaaacaagtgacgtagttaacaa 24902825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 24904278 - 24904340
Alignment:
Q  231 acgtttgatgagcatagaaacttgcttcctatccttttctaatgatttgagcccaagcttttt 293  Q
    ||||||||||||| |||||||||||||| |    |||| ||||||||||||| ||||||||||    
T  24904278 acgtttgatgagcgtagaaacttgcttcatgatgttttttaatgatttgagctcaagcttttt 24904340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 455
Target Start/End: Original strand, 19989032 - 19989172
Alignment:
Q  315 atgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagag 414  Q
    |||||||| |||||||||||||  ||||| ||  |||| ||||||| | |||||||||| | ||  |||||||||||||| |||||||| ||  | ||||    
T  19989032 atgaatgtcgttgccaaagttctccctgatacttctgctttactttgttattttcatatcgtgaagaatgtaagagctaagtgcatcatagatcgcagag 19989131  T
Q  415 tcaatccaaagttgaaggatgtaaaagtagatgagaaagaa 455  Q
    ||||  | |||  ||||||||||||||| |||| |||||||    
T  19989132 tcaaagcgaagccgaaggatgtaaaagttgatgggaaagaa 19989172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University