View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_2 (Length: 753)
Name: NF16068_high_2
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 13 - 736
Target Start/End: Original strand, 3675423 - 3676143
Alignment:
| Q |
13 |
aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttccaaacaacannnnnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3675423 |
aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttcaaaacaacatttttttag |
3675522 |
T |
|
| Q |
113 |
nnnnnnnnnnnnccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcggcaatgaaattcataaaatcccgatga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3675523 |
atatatttttt-ccacaaaaattgtggtattttgtcatggaaaaaagtaatctta--gcatatgtttggttcggcaatgaaattcataaaattccgatga |
3675619 |
T |
|
| Q |
213 |
tccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675620 |
tccatcgtgattttgacaaaaactatactttagagctttaacaaaatcatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc |
3675719 |
T |
|
| Q |
313 |
gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675720 |
gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa |
3675819 |
T |
|
| Q |
413 |
cccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttctttt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675820 |
cccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttctttt |
3675919 |
T |
|
| Q |
513 |
agctcctcaagtgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaac |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675920 |
agctcctcaagtgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaac |
3676019 |
T |
|
| Q |
613 |
atagtctttgcaaagaaccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttcca |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3676020 |
atagtctttgcaaagaaccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttcca |
3676119 |
T |
|
| Q |
713 |
tgttatctttttagtagtagtcat |
736 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3676120 |
tgttatctttttagtagtagtcat |
3676143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 3078969 - 3078928
Alignment:
| Q |
214 |
ccatcgtgattttgacaaaaattatactttaaagcttcaaca |
255 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3078969 |
ccatcatgattttgacaaaaattacactttgaagcttcaaca |
3078928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 333 - 726
Target Start/End: Complemental strand, 48553024 - 48552628
Alignment:
| Q |
333 |
agaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcat |
432 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||||||||| | | ||| ||||| | || ||||||||| || || ||||| |||||||||| |
|
|
| T |
48553024 |
agaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttcaaaccatgtctgagtttatcat |
48552925 |
T |
|
| Q |
433 |
caacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttcttttagctcctcaagtgtgaatgc |
532 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || |||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
48552924 |
caacaaaacccttatacacaggtccaaaaccaccttcaccaagcaaattactccttgaaaaattatgtgttgcttctcttagctcctcaagtgtaaatgt |
48552825 |
T |
|
| Q |
533 |
atgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttg---acttgaacttgaattgcttatatctgataaacatagtctttgcaaagaa |
629 |
Q |
| |
|
| ||| || |||||||| | |||| |||||||| ||||||||||| | | || || ||| |||||||||| ||||| | || ||||| |||||| |
|
|
| T |
48552824 |
gtaaagctttgaaccagctagtgaaatggaaagatcctcaatagcttgagtagtagagctagaaatgcttatatcagataagcttaccctttggaaagaa |
48552725 |
T |
|
| Q |
630 |
ccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttttag |
726 |
Q |
| |
|
|||||||||| ||| | ||| |||| ||| || || | |||||| ||||||||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
48552724 |
ccttgttttaaaacctttttttctggttcttctaatgagtattttgtcttgtaacaacctaagatcaagacaatagacttccatgtaatctttttag |
48552628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48553375 - 48553314
Alignment:
| Q |
15 |
tatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta |
76 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
48553375 |
tatccaattaacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta |
48553314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 10845900 - 10845985
Alignment:
| Q |
387 |
ttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacc |
472 |
Q |
| |
|
|||||||| |||| ||||||||| || |||||||||| |||||||||| | ||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
10845900 |
ttaacagcaacaggttgagccttcaaaccttgtctaaaattatcatcaaaataacccttatgaacagttccaaaaccaccttcacc |
10845985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1573965 - 1573924
Alignment:
| Q |
220 |
tgattttgacaaaaattatactttaaagcttcaacaaaatta |
261 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
1573965 |
tgattttgacaaaagttatactttaaagctttatcaaaatta |
1573924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University