View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_20 (Length: 489)
Name: NF16068_high_20
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 31617923 - 31617445
Alignment:
| Q |
9 |
aattattcttgaaacaacaaatattattaacggcgaacgggtgcaaggcacacaaacacgatcacgatcaagccgaaaaaagacaaagaaacaatacaac |
108 |
Q |
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| T |
31617923 |
aattatttttgaaacaacaaatattattaacggcgaacgggtgcaagaaacacaaacacgatcacgatcaagccaaaaaaaggcaaagaaacaatacaac |
31617824 |
T |
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| Q |
109 |
cgcagtgacgtatataggcggaacaccgcgacccccaaaagnnnnnnnncaaccaccaccaaccacacaccaacgcccaaaactcgatacagattaaaac |
208 |
Q |
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| T |
31617823 |
cgcagtaccgtatataggcggaacaccgtaacccccaaaagaaaaaaaacaaccaccaccaaccaca-accaacacccaaaattcagtacagattaaaac |
31617725 |
T |
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| Q |
209 |
ttaaaattcgtttgtattaaactttatctatatcctttaaagttcaaagaaagaaaataaaatgataaatccaagagtaaatcttttgaaagtaattaag |
308 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31617724 |
ttaaaattcgtttgtattaaactttaaatatattctttaaagttcaaacaaagaaaataaa-tgataaatccaagagtaaatcttttgaaagtaattaag |
31617626 |
T |
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| Q |
309 |
tagtacatataattgtacttttgtaaattggtagcactacaacaagtcctagctagatggttgatatatttatttgtttatttatttctctctttcaaaa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31617625 |
tagtacatataattgtacttttgtaaattggtagcactacaacaagtcctagctagatggttgatatatttatttgtttatttatttctttctttcaaaa |
31617526 |
T |
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| Q |
409 |
actaacttgtccttccgtattcattaaggnnnnnnnnnncctaaacctaccattcctttattgtgtgctctactctatgca |
489 |
Q |
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| T |
31617525 |
actaacctgtccttccgtattcattaaggaaaaaaaaaacctaaacctaccattcctttattgtgtgctctactttatgca |
31617445 |
T |
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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43880348 - 43880470
Alignment:
| Q |
20 |
aaacaacaaatattattaacggcgaacgggtgcaaggcacacaaacacgatcacgatcaagccgaaaaaagacaaagaaacaatacaaccgcagtgacgt |
119 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||| || ||| ||||||| ||||| |||| |||||||||| | ||| || |
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| T |
43880348 |
aaacaacaaatattattaacgacgaacgggtgcaagacacacaaacacattcgcgaacaagccg--aaaaggcaaaacaacaatacaaaaacggtgccgc |
43880445 |
T |
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| Q |
120 |
atataggcggaacaccgcgaccccc |
144 |
Q |
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| T |
43880446 |
atataggcggaataccgcaaccccc |
43880470 |
T |
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