View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_25 (Length: 445)
Name: NF16068_high_25
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 7498582 - 7498163
Alignment:
| Q |
11 |
agaatatccaaacatgtcaaaatcactcaacaattttggctcaaaatggaaccaactatacatttattgtttcacattgtgaatgaacatattatatacc |
110 |
Q |
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| T |
7498582 |
agaatatccaaacatgtcaaaatcactcaacaattttgcctcaaaatggaaccaactatacattgattgtttcacattgtgaatgaacatattatatacc |
7498483 |
T |
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| Q |
111 |
ttaaaagctgcttggatgattttcttatcaaagcctttgactagttcattgattcttgagtaagcaccaattgatggatcctgcaatttttgttcaaaca |
210 |
Q |
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| T |
7498482 |
ttaaaagctgcttggatgattttcttatcaaagcctttgactagttcattgattcttgagtaagcaccaattgatggatcctgcaatttttgtt--aaca |
7498385 |
T |
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| Q |
211 |
taaacaattgcaaacaaacaaggctttgaaacttcagtttaagaaaataatacaagtgcaagaagcttacaaatgtgctatcatcagtattggtaaacat |
310 |
Q |
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| T |
7498384 |
taaacaattgcaaacaaacaaggctttgaaacttcagtttaagaaaataatacaagtgcaagaagcttacaaatgtgctatcatcagtattggtaaacat |
7498285 |
T |
|
| Q |
311 |
tgcataaattcttagtttcttcctttggtcatccaagttgttgtgtatatagaaaacagatccttctgtgagacttcctacatctccttcacgtatatcg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7498284 |
tgcataaattcttagtttcttcctttggtcatccaagttgttgtgtatatagaaaacagatccttctgtgagacttcctacatctccttcacgtatatcg |
7498185 |
T |
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| Q |
411 |
attgtgctagtaccgtcttcat |
432 |
Q |
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| T |
7498184 |
attgtgctagtaccgtcttcat |
7498163 |
T |
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