View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_28 (Length: 417)
Name: NF16068_high_28
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 32733187 - 32733572
Alignment:
| Q |
14 |
agacatcatagacagtggtgaatcaagacctatagatataggcaaaaattcagacacaatgagaaccctttgtaactctgtggtttccttagcatggaga |
113 |
Q |
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| T |
32733187 |
agacatcatagacagtggtgaatcaagacctatagatataggcaaaaattcagacacaatgagaaccctttgtaactctgtggtttccttagcatggaga |
32733286 |
T |
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| Q |
114 |
agtaacaatggtactccaactgatgtttgtcattgggtagatggatttcctttcaatcttcatctatacacttctcttcttcaagcgatttttgatatac |
213 |
Q |
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| T |
32733287 |
agtaacaatggtactccaactgatgtttgtcattgggtagatggattccctttcaatcttcatctatacacttctcttcttcaagcgatttttgatatac |
32733386 |
T |
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| Q |
214 |
gggacgaaacattagtccttgatgaagttgatgagctttttgaactcatgaagaaaacatggtcaacatttgggatcacattgccaattcacaatatttg |
313 |
Q |
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| T |
32733387 |
gggacgaaacattagtccttgatgaagttgatgagctttttgaactcatgaagaaaacatggtcaacatttgggatcacattgccaattcacaatatttg |
32733486 |
T |
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| Q |
314 |
cttcacttgggttctgtttcatcagtatatagctactggacagattgaacctgatcttctttcggcttcatatgttatgttgactg |
399 |
Q |
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| T |
32733487 |
cttcacttgggttctgtttcatcagtatatagctactggacagattgaacctgatcttctttcggcttcatatgttatgttgactg |
32733572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 55 - 247
Target Start/End: Complemental strand, 16795130 - 16794938
Alignment:
| Q |
55 |
gcaaaaattcagacacaatgagaaccctttgtaactctgtggtttccttagcatggagaagtaacaatggtactccaactgatgtttgtcattgggtaga |
154 |
Q |
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| T |
16795130 |
gcaaaaactccgacacaatgagaacacttggtaactctgttgtttcattagcatggagaggtccaaatggaacaccagctgatgtttgtcactgggctga |
16795031 |
T |
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| Q |
155 |
tggatttcctttcaatcttcatctatacacttctcttcttcaagcgatttttgatatacgggacgaaacattagtccttgatgaagttgatga |
247 |
Q |
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| T |
16795030 |
tggattccctttaaatattcatttctataattcacttcttcaagccatttttgatattcgagaagagacattagtccttgatgaagtcgatga |
16794938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 396
Target Start/End: Complemental strand, 14878640 - 14878299
Alignment:
| Q |
55 |
gcaaaaattcagacacaatgagaaccctttgtaactctgtggtttccttagcatggagaagtaacaatggtactccaactgatgtttgtcattgggtaga |
154 |
Q |
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| T |
14878640 |
gcaaaaactcagaaacaatgagaacctttagcaattctgtggtttccttatcgatgagaagtccggatggtgttcccaccaatgtttgccattgggctaa |
14878541 |
T |
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| Q |
155 |
tggatttcctttcaatcttcatctatacacttctcttcttcaagcgatttttgatatacgggacgaaacattagtccttgatgaagttgatgagcttttt |
254 |
Q |
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| T |
14878540 |
tggatttcctgtcaatattcacctctacatttcccttcttcaatccattttcgatcttgatgatgaaacatcagtccttgacgaaatcgacgagttgctt |
14878441 |
T |
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| Q |
255 |
gaactcatgaagaaaacatggtcaacatttgggatcacattgccaattcacaatatttgcttcacttgggttctgtttcatcagtatatagctactggac |
354 |
Q |
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|| |||||||||||||| ||||| || | ||||||| ||||||||||||| | || ||||||||| |||||||||| || ||| |||| | || || |
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| T |
14878440 |
gagctcatgaagaaaacttggtcgacgctagggatcaataggccaattcacaatttgtgtttcacttggattctgtttcaacaatatgtagcaagtgaac |
14878341 |
T |
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| Q |
355 |
agattgaacctgatcttctttcggcttcatatgttatgttga |
396 |
Q |
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| T |
14878340 |
agagcgaacctgaccttctttgtgcctcacatgctatgttga |
14878299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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