View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_29 (Length: 402)
Name: NF16068_high_29
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 43398090 - 43397705
Alignment:
| Q |
1 |
gttggtcttgcatcacttcaagaaacacaacaagttaatacattgaacttgaatattatcaataacttctcaatttcaatgtgtggggaaacataaatct |
100 |
Q |
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| T |
43398090 |
gttggtcttgcatcacttcaagaaacacaacaagttaatacattgaacttgaatattatcaataacttctcaatttcaatgtgtggggaaacataaatct |
43397991 |
T |
|
| Q |
101 |
tacactgatcaaataaagcatatctgtagtttggggctaagccaaccaaaagcagctggactgcctctgcatctcttgtcatcgatactgcagccgaagc |
200 |
Q |
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| T |
43397990 |
tacactgatcaaataaagcatatctgtagtttggggctaagccaaccaaaagcagctggactgcctctgcatctcttgtcatcgatactgcagccgaagc |
43397891 |
T |
|
| Q |
201 |
ttttagattctgtgtatctagcagaataccagcaagctgaaaaataacatataagcatagagtaatatcctaagaattataccaaaagtaattatcgaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43397890 |
ttttagattctgtgtatctagcagaataccagcaagctgaaaaataacatataagcatagagtaatatcctaagaattataccaaaagtacttatcgaga |
43397791 |
T |
|
| Q |
301 |
aattatctaagaatgcgatgaatttaccaatagtttcttcagcacagagttctgaagtagatcatatgcatcctcacagtaattat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43397790 |
aattatctaagaatgcgatgaatttaccaatagtttcttcagcacagagttctgaagtagatcatatgcatcctcacagtaattat |
43397705 |
T |
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