View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_32 (Length: 397)
Name: NF16068_high_32
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 32290213 - 32290012
Alignment:
| Q |
102 |
ttttcaaaaatacattcacttgaagttatgaacttgaatggtagttataaattgttctcagaaacaagatagttacaagtcgtccttaggaacgagag-t |
200 |
Q |
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| T |
32290213 |
tttttaaaaatacatccacatgaagttatgaacttgaatggtagttataaattgttctcagaaacaagatagttacaagtcgtccttaggaacgagagtt |
32290114 |
T |
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| Q |
201 |
aagatgtggaagcaggaaggaatgcggcatgagaattagaatttcttaatttgacatttttaaagacactcaacattctcaaacaactcacaaacataat |
300 |
Q |
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| T |
32290113 |
aagatgtgggagcaggaaggaatgcggcatgagaattagaatttcttaatttgacattcttaaaaatactcaacattctcaaacaactcacaaacacaat |
32290014 |
T |
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| Q |
301 |
ta |
302 |
Q |
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|| |
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| T |
32290013 |
ta |
32290012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 32290479 - 32290392
Alignment:
| Q |
16 |
gatactactcctatttcatgtatgacttttggaggtcaatttt-gtaaattgttgtttagctcgaaattggtcgcaagcaactcaaat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32290479 |
gatactactcctatttcatgtatgacttttggaggtcaatttttgtaaattgttgtttagctcgaaattggtcgcaagcaactcaaat |
32290392 |
T |
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