View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_36 (Length: 381)
Name: NF16068_high_36
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 2159324 - 2159049
Alignment:
| Q |
17 |
acaataagcattcataattttgttttcttctcctatctagaccaactacgattttgtttatctaagtagaaacatcatttatgaataaagtacactgaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2159324 |
acaataagcattcataattttgttttcttctcctatatagaccaactacgattttgtttatctaagtagaaacatcatttatgaataaagtacaccgaat |
2159225 |
T |
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| Q |
117 |
gtggtgttttggatttgaggtcacgttactttagaggtacctttctaattcaaatgtagaaatttcataattgtgcaaggttttgataaatcaatatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2159224 |
gtggtgttttggatttgaggtcacgttactttagaggtacctttccaattcgaatgtagaaatttcataattgtgcaaggttttgataaatcaatatcat |
2159125 |
T |
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| Q |
217 |
acggtacaacatatgcttccatgtcagcatcaaccaaaattctcgcttgactttctataaatttgagtatcttaaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2159124 |
acggtacaacatatgcttccatgtcagcatcaaccaaaattctagcttgactttctataaatttgagtatcttaaa |
2159049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 2159029 - 2158936
Alignment:
| Q |
288 |
ttaaaaaacaattgttcctgatagaattccattgtgaatccttatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaatt |
381 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2159029 |
ttaaaaaacaattgttcctgatagaattcaattgtgaatcattatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaatt |
2158936 |
T |
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