View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_high_37 (Length: 362)

Name: NF16068_high_37
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_high_37
NF16068_high_37
[»] chr1 (8 HSPs)
chr1 (1-352)||(10988103-10988454)
chr1 (1-352)||(11019271-11019622)
chr1 (3-82)||(10999954-11000033)
chr1 (1-76)||(11034918-11034993)
chr1 (3-51)||(11002931-11002979)
chr1 (13-76)||(11009505-11009568)
chr1 (14-57)||(10975569-10975612)
chr1 (3-57)||(10905515-10905569)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 10988454 - 10988103
Alignment:
Q  1 ccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaatattctttctaataactccatccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10988454 ccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaatattctttctaataactccatccct 10988355  T
Q  101 cctagtgatttcagtccttttttcacctcaaatatctacgtaccttatctagnnnnnnnctattcgttccgcaatatattgacgaaatttatgttgcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||  |||||| |||||||||| ||||||||||||    
T  10988354 cctagtgatttcagtccttttttcacctcaaatatctacgtaccttatctagaaaaaaacaattcgttgagcaatagattgacgaaacttatgttgcatg 10988255  T
Q  201 tgagctgtccgaaccaggctggttacatatacagagataactgtaggaatagtagtttgtattcacggtacgagaattctttctatgttgatggctactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10988254 tgagctgtccgaaccaggctggttacatatacagagataactgtaggaatagtagtttgtattcacggtacgagaattctttctatgttgatggctactt 10988155  T
Q  301 caaaactctttcggagttggagttgggagatggatgtcgtatagagcctatg 352  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  10988154 caaaactctttcggagttggggttgagagatggatgtcgtatagagcttatg 10988103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 11019622 - 11019271
Alignment:
Q  1 ccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaatattctttctaataactccatccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11019622 ccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaatattctttctaataactccatccct 11019523  T
Q  101 cctagtgatttcagtccttttttcacctcaaatatctacgtaccttatctagnnnnnnnctattcgttccgcaatatattgacgaaatttatgttgcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||  |||||| |||||||||| ||||||||||||    
T  11019522 cctagtgatttcagtccttttttcacctcaaatatctacgtaccttatctagaaaaaaacaattcgttgagcaatagattgacgaaacttatgttgcatg 11019423  T
Q  201 tgagctgtccgaaccaggctggttacatatacagagataactgtaggaatagtagtttgtattcacggtacgagaattctttctatgttgatggctactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11019422 tgagctgtccgaaccaggctggttacatatacagagataactgtaggaatagtagtttgtattcacggtacgagaattctttctatgttgatggctactt 11019323  T
Q  301 caaaactctttcggagttggagttgggagatggatgtcgtatagagcctatg 352  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  11019322 caaaactctttcggagttggggttgagagatggatgtcgtatagagcttatg 11019271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10999954 - 11000033
Alignment:
Q  3 atggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaatattctt 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||| | ||||||||| ||||    
T  10999954 atggttcatttggaaaatactatgtacaatcgattaattacaacaactttaccatacgattattggatttcaataatctt 11000033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11034993 - 11034918
Alignment:
Q  1 ccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaat 76  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||||    
T  11034993 ccatgattcatttggaaaatactatgtacaatcaattaattacaacaacttcaccatacgactattggatttcaat 11034918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 11002931 - 11002979
Alignment:
Q  3 atggttcatttggaaaatactatgtacaatcaattaattacaacaactt 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11002931 atggttcatttggaaaatactatgtacaatcaattaattacaataactt 11002979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 11009568 - 11009505
Alignment:
Q  13 tggaaaatactatgtacaatcaattaattacaacaactttaccatccaactatcgtatttcaat 76  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||||    
T  11009568 tggaaaatactatgtacaatcaattaattacaacaacttcaccatacgactattggatttcaat 11009505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 10975612 - 10975569
Alignment:
Q  14 ggaaaatactatgtacaatcaattaattacaacaactttaccat 57  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  10975612 ggaaaatattatgtacaatcaattaattacaacaactttaccat 10975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 10905569 - 10905515
Alignment:
Q  3 atggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccat 57  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  10905569 atggatcatttggaaaatattatgtacaatcaattaattacaacaatttcaccat 10905515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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