View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_41 (Length: 349)
Name: NF16068_high_41
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 20770005 - 20769681
Alignment:
| Q |
18 |
agttaggatcagttagaggcatttttgagatttcgagaagcctgtgagtaattgaaggggcctatagagaaattttcattatgttaatattgtctgggcc |
117 |
Q |
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| T |
20770005 |
agttaggatcagttagaggcatttttgagatttcgagaagcctgtgagtaattgaaggggcctatagagcaattttcattatgttaatattgtctgggcc |
20769906 |
T |
|
| Q |
118 |
tccaatctatacaatgcccaagaagtccacttgaaattcaagatggaggtgtgaatagcaaatatttgtgcaattgctatttcttaaattgacgatgaat |
217 |
Q |
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| T |
20769905 |
tccaatctatacaatgcccaagaagtccacttgaaattcaagatggaggtgtgaatagcaaaaatttgtgcaattgctatttcttaaattgacgatgaat |
20769806 |
T |
|
| Q |
218 |
tacgtaggtgcgtctggttaggattcctgtttaatttaaccatgggatttagatatagttagtgtatttggaggatgttgcccttgacaacaatcctatg |
317 |
Q |
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| T |
20769805 |
tacgtaggtgcgtctggttaggattcctgtttaatttaaccatgggatttagatataattagtgcatttggaggatgttgcccttgacaacaatcctatg |
20769706 |
T |
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| Q |
318 |
acagtcttcaaaaaacaaccctatg |
342 |
Q |
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| T |
20769705 |
aaagtcttcaaaaaacaaccctatg |
20769681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 14584643 - 14584679
Alignment:
| Q |
62 |
tgagtaattgaaggggcctatagagaaattttcatta |
98 |
Q |
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| T |
14584643 |
tgagtaattgaaggggcctaaagagaaattttcatta |
14584679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 14609543 - 14609579
Alignment:
| Q |
62 |
tgagtaattgaaggggcctatagagaaattttcatta |
98 |
Q |
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|||| ||||||||||||||| |||||||||||||||| |
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| T |
14609543 |
tgagcaattgaaggggcctaaagagaaattttcatta |
14609579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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