View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_44 (Length: 335)
Name: NF16068_high_44
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 153 - 326
Target Start/End: Complemental strand, 23331248 - 23331074
Alignment:
| Q |
153 |
ttattatttcttcattttctacaaataaatcaaaac-atattatacatttagtcctatcaattacctttgcaataaccttatcattaaaaagaacgttaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23331248 |
ttattatttcttcattttctacaaataaatcaagaccatgctgtacgattagttctatcaattacctttgcaataaccttctcattaaaaagaacgttat |
23331149 |
T |
|
| Q |
252 |
tgcgcttcaaccaaatgtatcatgccatagctaaccaaattagacgagacaattttctatcaatcttccctttgc |
326 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
23331148 |
tgcgcttcaaccaaatgcatcataccatagctaaccaaattagactagacaattttctaccaatcctccctttgc |
23331074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 23331449 - 23331328
Alignment:
| Q |
18 |
acatcatgtatatttcgagagct-atcataaaagtttgcccaatatatttaaatctttaaaaatattttattcatgcatcgaatgannnnnnnatacaca |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
23331449 |
acatcatgtatatttcgagagcttatcataaaagtttgcccaatatatttaaatctttaaaaatattttattcatgcatcaaatgatttttttatacac- |
23331351 |
T |
|
| Q |
117 |
aaaagattctactaatttgatta |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23331350 |
aaaagattctactaatttgatta |
23331328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 5487356 - 5487401
Alignment:
| Q |
279 |
tagctaaccaaattagacgagacaattttctatcaatcttcccttt |
324 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
5487356 |
tagctaaccaaattagatgagacatttttctaccaatattcccttt |
5487401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 9936489 - 9936419
Alignment:
| Q |
254 |
cgcttcaaccaaatgtatcatgccatagctaaccaaattagacgagacaattttctatcaatcttcccttt |
324 |
Q |
| |
|
|||| |||||| ||| | |||| | ||||||||||||||||| ||||||| ||||||||| |||| ||||| |
|
|
| T |
9936489 |
cgctccaaccatatgcaccatgtcgtagctaaccaaattagatgagacaactttctatcagtctttccttt |
9936419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University