View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_47 (Length: 327)
Name: NF16068_high_47
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 41654511 - 41654816
Alignment:
| Q |
20 |
attacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactccttaaattttcatcctgtaatacac-----ttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | || | |
|
|
| T |
41654511 |
attacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactcgttaaattttcatcctgtaaaatatcaacattaa |
41654610 |
T |
|
| Q |
115 |
taatatcaacatt--atttggaaagttgtggattcaatattcttttctagaagatcttatcgat---gtctttgtcttcaggtacatcacacttttgcaa |
209 |
Q |
| |
|
| | | || || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41654611 |
ttagttaaattttttatttggaaagttgtggattcaatattcttttctagaagatcttatcgatcatgtctttgtcttcaggtacatcacacttttgcaa |
41654710 |
T |
|
| Q |
210 |
ctgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatcgatgtcttcttttcacct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654711 |
ctgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatcgatgtcttcttttcacct |
41654810 |
T |
|
| Q |
310 |
ttgctt |
315 |
Q |
| |
|
|||||| |
|
|
| T |
41654811 |
ttgctt |
41654816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 28815982 - 28815873
Alignment:
| Q |
163 |
aagatcttatcgatgtctttgtcttcaggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagaga |
262 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28815982 |
aagatcttattgatttctttgatttcaggtacatcacacttttgcaactgctggatctgacggtgcttttaatttctgggataaggacagtaaacagaga |
28815883 |
T |
|
| Q |
263 |
ctcaaggttc |
272 |
Q |
| |
|
|||||||||| |
|
|
| T |
28815882 |
ctcaaggttc |
28815873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 28816138 - 28816039
Alignment:
| Q |
29 |
caagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactccttaaattttcatcctgtaatacactttataatatcaacatta |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| || |||||||| ||||||||||||||||| ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
28816138 |
caagaattttacttttaaatgccacagagaaagtaacgagatatattcggtcaactccttaaatttccatccggtaatgcactgtataatatcaaaatta |
28816039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 1460565 - 1460483
Alignment:
| Q |
189 |
aggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggtt |
271 |
Q |
| |
|
||||||| ||||| ||||| || ||||| ||||||||||||||| |||| ||||| ||| | ||||||||||| || |||||| |
|
|
| T |
1460565 |
aggtacaccacacatttgctacggctggttctgatggtgcttttaatttttgggacaaggatagtaaacagaggcttaaggtt |
1460483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University