View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_high_50 (Length: 323)

Name: NF16068_high_50
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_high_50
NF16068_high_50
[»] chr5 (6 HSPs)
chr5 (14-306)||(40181139-40181431)
chr5 (106-254)||(38605675-38605820)
chr5 (95-183)||(40180547-40180635)
chr5 (38-174)||(41885856-41885992)
chr5 (115-246)||(38604989-38605120)
chr5 (196-238)||(41885995-41886037)
[»] chr8 (5 HSPs)
chr8 (63-251)||(44459540-44459725)
chr8 (63-251)||(44467073-44467258)
chr8 (94-254)||(44460273-44460430)
chr8 (94-254)||(44467806-44467963)
chr8 (115-254)||(34502246-34502382)
[»] chr1 (1 HSPs)
chr1 (94-254)||(46359143-46359300)
[»] chr6 (1 HSPs)
chr6 (106-254)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 40181431 - 40181139
Alignment:
Q  14 atattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttga 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40181431 atattggccgctatgaaactgactttcttaatgcaaggattctcaataaactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttga 40181332  T
Q  114 tgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181331 tgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgat 40181232  T
Q  214 atgatccaccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgac 306  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181231 atgatccaccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgac 40181139  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 38605820 - 38605675
Alignment:
Q  106 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 205  Q
    |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || ||||||| |||||| |||||||||||   || ||||| |||||    
T  38605820 gcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gaccacaacgtgta 38605724  T
Q  206 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    |||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605723 gtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  95 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 183  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  38 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 137  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  138 tcaatgtgtgccaaatcaagatacttattactataca 174  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  115 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 214  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  215 tgatccaccaaacagcttctatctatcaaaag 246  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  196 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 238  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  63 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 162  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  163 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 251  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  63 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 162  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  163 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 251  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 44460273 - 44460430
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44460273 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44460370  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460371 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 44467806 - 44467963
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44467806 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44467903  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467904 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  115 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 214  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  215 tgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 46359143 - 46359300
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  46359143 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 46359240  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359241 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  106 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 205  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  206 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

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