View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_54 (Length: 313)
Name: NF16068_high_54
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 31962317 - 31962613
Alignment:
| Q |
1 |
ggtcagaggattttattactttctcatcatctcttcctgtaaggttttattattatttttattcnnnnnnntaaaatttcaattggaagagctgtgtgtg |
100 |
Q |
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| T |
31962317 |
ggtcagaggattttattactttctcatcatctattcctgtaaggttttattattatttttattcaaaaaaataaaatttcaattggaagagctgtgtgtg |
31962416 |
T |
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| Q |
101 |
agtaataaaatctattgttaattgaattctcaggttcttgcagacatattaccgaaagaaacacttctgtggaaactaaagatgcttaagtctgcttcag |
200 |
Q |
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| T |
31962417 |
agtaataaaatctattgttaattgaattctcaggttcttgcagacatattaccgaaagaaacacttctgtggaaactaaagatgcttaagtctgcttcag |
31962516 |
T |
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| Q |
201 |
cgtatgctaattcacgactatatgctatcaaagctcagactttgatactttgcaggttcattctccttgggattgtacaccttacatcagtcactat |
297 |
Q |
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| T |
31962517 |
tgtatgctaattcacgactatatgctatcaaagctcagactttgatactttgcatgttcattctccttgggattgtacaccttacatcagtcactat |
31962613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 107 - 293
Target Start/End: Original strand, 31947631 - 31947817
Alignment:
| Q |
107 |
aaaatctattgttaattgaattctcaggttcttgcagacatattaccgaaagaaacacttctgtggaaactaaagatgcttaagtctgcttcagcgtatg |
206 |
Q |
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| T |
31947631 |
aaaatctattgttgattgaattctcaggttcttgcagacatattaccaaaagaaacacttttgtggaaactaaagatgcttaaatctgcttcagcgtatg |
31947730 |
T |
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| Q |
207 |
ctaattcacgactatatgctatcaaagctcagactttgatactttgcaggttcattctccttgggattgtacaccttacatcagtca |
293 |
Q |
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| T |
31947731 |
ctaattcaggcctacatgctatcaaagctcagactttgatactttgcaggttcattattcttgggattgtacatcttacattagtca |
31947817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 31972979 - 31973155
Alignment:
| Q |
116 |
tgttaattgaattctcaggttcttgcagacatattaccgaaagaaacacttctgtggaaactaaagatgcttaagtctgcttcagcgtatgctaattcac |
215 |
Q |
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|||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| || || | ||||| ||||||| |
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| T |
31972979 |
tgttgattgaattcacaggttcttgcagacatattaccaaaagaaacacttctctggaaactaaagatgtctaagtcagcatctgaatatgccaattcac |
31973078 |
T |
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| Q |
216 |
gactatatgctatcaaagctcagactttgatactttgcaggttcattctccttgggattgtacaccttacatcagtc |
292 |
Q |
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| T |
31973079 |
gtctttatgctatcaaagctcaaactttgatactcagcaggttcattctctttgaaattgtacatgttacatcagtc |
31973155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 31947325 - 31947422
Alignment:
| Q |
5 |
agaggattttattactttctcatcatctcttcctgtaaggttttattattatttttattcnnnnnnntaa-aatttcaattggaagagctgtgtgtga |
101 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
31947325 |
agaggattttaccactttctcatcatctcttcctgtaaggttcttttattgtttttattaaaaacttaaagaatttcaattggaagagctgtgtgtga |
31947422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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