View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_55 (Length: 313)
Name: NF16068_high_55
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_55 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 34593106 - 34592971
Alignment:
| Q |
1 |
tacgtattattaatgccattattgtattcaatgctaatgtcattctttcataaatagaaaagtatgacactaatactaaactatttttaggtgcatacat |
100 |
Q |
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| T |
34593106 |
tacgtattattaatgccattattgtattcaatgcttatgtcattctttcataaatagaaaagtatgacactaatactaaactatttttaggtgcatacat |
34593007 |
T |
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| Q |
101 |
ctcttctattcacaaacaaataaagcaaagtcaaaa |
136 |
Q |
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| T |
34593006 |
ctcttctattcacaaacaaataaagcaaagacaaaa |
34592971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 183 - 313
Target Start/End: Complemental strand, 34592915 - 34592785
Alignment:
| Q |
183 |
atgttctcaagaaaattttcttaatatagatagatgtgtatgttgtaggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaata |
282 |
Q |
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| T |
34592915 |
atgttctcaagaaaattttcttaatatagatagatgtgtatgttgtaggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaata |
34592816 |
T |
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| Q |
283 |
ggagctcatcaaaggcaacggtaactgcatc |
313 |
Q |
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| T |
34592815 |
ggagctcatcaaatgcaacggtaattgcatc |
34592785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 34592959 - 34592927
Alignment:
| Q |
127 |
aaagtcaaaattgattgtattcatatatatcct |
159 |
Q |
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| T |
34592959 |
aaagtcaaaattgattgtattcatatatatcct |
34592927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 32589625 - 32589540
Alignment:
| Q |
228 |
taggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatc |
313 |
Q |
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| T |
32589625 |
taggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatc |
32589540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 32600073 - 32599988
Alignment:
| Q |
228 |
taggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatc |
313 |
Q |
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| T |
32600073 |
taggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatc |
32599988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 24884315 - 24884399
Alignment:
| Q |
229 |
aggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatc |
313 |
Q |
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| T |
24884315 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatc |
24884399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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