View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_64 (Length: 278)
Name: NF16068_high_64
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 34023119 - 34023373
Alignment:
| Q |
18 |
acaatcatgaaaggtgactaataaacttctccat--ttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcactaaaaccaaagattt |
115 |
Q |
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| T |
34023119 |
acaatcatgaaaggtgattaataaacttctccatatttatgggaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaccaaagattt |
34023218 |
T |
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| Q |
116 |
gctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagat |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023219 |
gctatgttcatgaagttgtaaaatggaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagat |
34023318 |
T |
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| Q |
216 |
tcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
270 |
Q |
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| T |
34023319 |
tcatgtattcaatgaataagtctatcactttagttcattaattagagttcatctc |
34023373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 34030372 - 34030625
Alignment:
| Q |
18 |
acaatcatgaaaggtgactaataaacttctccatttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcactaaaacc-aaagatttg |
116 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||| |
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| T |
34030372 |
acaatcatgaaaggtgattaataaacctctccatttatgcgaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaactaaagatttg |
34030471 |
T |
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| Q |
117 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
34030472 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaaataggctgacaatgagttaagtaaagataatattagtggacagatt |
34030571 |
T |
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| Q |
217 |
catgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
270 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
34030572 |
catgtattcaatgaatatgtctctcactttagttcattgattggagttcatctc |
34030625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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